LOC113547266


Basic Information

Item Value
gene id LOC113547266
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5195675 ~ 5209761 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304018.1
GTTCTGTCTGAGTGCAGCTTTATTTCCGCCTGTGTGCTTACAGATCTGCTGACGCTATACAGATCTCTGTTcaggagtttttatttttctaaacaactgtgttttatttttttcttgtcagtAAAAATCAGGTGACTTTCAGACACACGAGTTTGCTGTAAGTGACTGTGTGAgagtttgtttttcagtaaaatgGCGGAAGCGAATATTTTAGGACTTCAGGATCGTTTCAGCTGTTCAATCTGTCTGGATCTACTCAAGGATCctgtagctcttctgtgtgGACACAGTTTCTGTATGATGTGTATTAATGGCTGCTGGGATCAGGAGGATCAGAAGGGAGTCTATAGCTGTCCTCAGTGTAGACAAACCTTCACTCCAAGACCTGTTGTGAGTAAAAACACCATGCTGGCTGAAGTAGTGGAGACACTGAAGAAGACAGGACTCCAAGCTACACGTCCTGCTCAGTGTTCAGCTGGACCTGAagatgtggagtgtgatttcTGCACTGGGAGAAAATCCAAAGCCATCAAGTCCTGTCTGGTGTGTCTGGCCTCTTTCTGTGAAACTCACCTCCAGCCTCACTATGAATCTCCTGCCTATAAGAAGCACAAGCTGGTCGAAGCCTCCAGACGACTCCAGGAGCAGATCTGCTCTCAGCATGACAAACTGCTGGAGGTTTACTGTCGCACTGACCAGCAGTGTATCTGCATTCTTTGTACCATGGATGAACATAAAAGACATGATACAGTATCAGCTGCAGCAGGAAGAGCTGAGAAACAGAAACAGTTGTTGGAGGTGCAGGGAAAAAGCCAGCAGAAAATCCAAGAGAGACAGTGGGAGCTTCAGGAGTTAATGAAGGCTTTGGAGTCTCACAAGcactctgcacagacagcagTGCAGGAAACTGAGAGgatctttactgagctgatcaAATCCATTGAGAGAAGATGCTCTGAGGTGACAgagctgatcagagctcaggagaaagCTGCAGTGAGTCGAGCTGAAGAAGTCATGACacaactggagcaggagattgcagagctgaagagcagagatgctGAGATGGAGGAACTTTTACACACAGAGGATCCCATCCATTTCCTCCAGagttttcaGTCTGTCGTGACCTCTCCTGGATCTGCAGATTTACCCACCATTGTGGTCagttctttcctcttttttgaAGATGTAGTAAAGTCTGTGTCTCAGTTACAAGAGAAGCTGGAAGCATGCTCTAAAGAGCAGTTTGAGAAGATACCAAGTGAAGTGAAGAAAGTCCTGATCTTACCACCCCAAAGCAGAGAGGAATGTCTACAATATTCCAGGCAGCTCACACTGGATCCCAACACAGCACATCAACGCCTCCAACTGTCTGATTCAAGCAGAATGGCGACTGACAAAGACATCCAGTCATATTATGAGTATCCAGAAAGCTTTAACGGTTACTCCCAGGTGTTGTGtagtcagagtgtgtgtgaaccctgttactgggaggtggagtggagTGGGAATAATGGGGTTTCTATAGCAGTGTCATATaaagacatcatgaggaagggaagcggtaatgagtgtgtgtttggacgCAATAAGAAGTCCTGGAATTTGCAGTGCTACTCGTCTCACTGCTCATTCTTACACAACAACCAAGAAACCAAAATCCCCATAAAGCCCAGCTCCTCTAGAATAGGAGTGTTTGTGGATCACAAGGCAGGAATTCTGTCTTTCTACAGCGTCTCTGACACAGTGAagctcctccacagagtccacaccacattcactcagcctctTTACCCTGGGTTTGGGCTAAATCACTATTCAACAGTAAAACTGTGCCATTGAAAATACATAATTTTGGAAGATTAACCCTGTATGGTACACATTAAAGTGATATAGAAATAAAGCCATGCTATGTGCTaccattaaaaaatgttgtttcaTAATGTCAAGAGATTATAAAACTGACTTTTTGTTTAAAgtctttaaagaaataaaaaaaaaaaatctaaccagTTTAAACCTAAAAAATGCGGTCAGTAAAAACTATATAAAAGTTATTGCTAGCAAtctatgaaaataaattgtgttaaaaataaaaagaaatgaaatatatagTCTAGGTGTTCATATCTACCACTGTTCTCTATGTAAAAAGTTATGCAAAATGGTTTTCCTTGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304018.1 True 2187 mRNA 0.43 7 5195675 5209761

Neighbor

gene id symbol gene type direction distance location
LOC113547246 LOC108267254,LOC108261847,LOC108268247,LOC108262218,LOC108268074,LOC108268075,LOC108268261 coding upstream 3930 5191076 ~ 5191745 (+)
LOC113547260 LOC108261847,LOC108267254 coding upstream 17285 5152315 ~ 5178390 (+)
LOC117597179 NA coding upstream 31051 5164066 ~ 5164624 (+)
LOC117597061 LOC108261662 coding upstream 145600 5045128 ~ 5050075 (+)
LOC117597060 NA coding upstream 260757 4922651 ~ 4934918 (+)
LOC113547265 LOC108268247,LOC108268075,LOC108267254,LOC108261847 coding downstream 30922 5240683 ~ 5252849 (+)
LOC113547263 LOC108261082 coding downstream 76596 5286357 ~ 5306541 (+)
LOC113547286 prdx6,LOC108267850,LOC108414843 coding downstream 192523 5402284 ~ 5410215 (+)
LOC113547281 LOC108267848 coding downstream 221475 5431236 ~ 5433720 (+)
angptl1b LOC108268093,LOC108440936,LOC105891317 coding downstream 239721 5449482 ~ 5466119 (+)
G59521 LOC108268222,LOC108268223 non-coding upstream 177873 5011920 ~ 5017802 (+)
G59483 NA non-coding upstream 237361 4958062 ~ 4958314 (+)
G59479 NA non-coding upstream 243077 4952371 ~ 4952598 (+)
G59478 NA non-coding upstream 245024 4950300 ~ 4950651 (+)
G59329 NA non-coding upstream 496880 4677167 ~ 4698795 (+)
LOC113547270 NA non-coding downstream 54255 5264016 ~ 5266014 (+)
G59663 NA non-coding downstream 92121 5301882 ~ 5369456 (+)
G59725 NA non-coding downstream 219520 5429281 ~ 5429622 (+)
G59712 NA non-coding downstream 228083 5437844 ~ 5438721 (+)
G59745 NA non-coding downstream 282440 5492201 ~ 5492461 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 5962 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 180862 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 239208 4947137 ~ 4956467 (+)
G59366 ube3c other upstream 487277 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 542554 4650477 ~ 4653121 (+)
LOC113547289 LOC108267851 other downstream 178607 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 370035 5579796 ~ 5596225 (+)
trnat-ugu_2 NA other downstream 933771 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 1385365 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 1474575 6684336 ~ 6704346 (+)

Expression


Co-expression Network