arl8 (arl5b,LOC103034648,LOC100708858,LOC107591025,LOC103373092,LOC107723111)


Basic Information

Item Value
gene id arl8
gene name arl5b,LOC103034648,LOC100708858,LOC107591025,LOC103373092,LOC107723111
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21934492 ~ 21945588 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304043.1
GTGTGGGAACCCTAAGGCGTTGGGGGATGGTGGTGCGCTAGTGTACAGCTGGGCGCTAAGCaccactactgctactactgctgctgcttaCTACCCGCTTAACTACACCGGAGACACCTCGTGTTCGCTTTAGTACCCCGGCGGCCAGTCCACGCTGGAGACTGGGATGTGACTGTAGCGGATTACAGAGCAGCTCGGTcagcagtacacacacacacacacacacacacacacacactctctctctctctctctctctctctctctctctgagactCTGTGAGATGTGGAGGCAGCGCCGGCTTTTGACAGAAACTGAGGTGCCTTGCCTGGCCGGGGTGTAAACATCTTTTCCGCAGCGCAGACAGTCGGCTCGTTGCTCCCCGGAGATGGGCTGTGTGGAGCTAGCGTAGCCGGGTAACATAACGGGTTAGCAGGACCGCGCGGCTCAGGCCAGGCCGCTCCTCTCTCCACCGCGCGCGCCACAGTCTCACACAAAGCCATGGGCCTGATTGTAGCCAAACTGTGGAGCTTCTTCTGTAATCAAGAACACAAGGTGATCATCGTGGGTCTTGACAATGCTGGAAAGACGACCATTCTTTACCAGTTCCTGATGAAAGAGGTCGTCCACACGTCCCCAACGATTGGCAGTAACGTTGAAGAGATCGTTGTGAAGAATACACACTTCCTAATGTGGGACATTGGTGGCCAGGAGAGTCTTCGGTCCTCTTGGAACACCTACTATTCCAACACCGAGTTCATAATCCTGGTAGTGGACAGTACAGATAGAGAAAGGCTTGCTATCTCTAAAGAGGAGCTGTACAGAATGCTGGCACATGAGGATTTGCGTAAAGCTGCAGTGTTGATTTTTGCTAATAAGCAGGATATGAAGGGCTGTATGTCTGCAGCAGAGATTTCAAAATACCTGACCCTCAGCTCCATCAAAGACCATCCATGGCACATTCAGTCCTGCTGTGCTCTTACAGGAGAAGGGCTGTGCCAGGGCCTGGAGTGGATGACCTCGAGGGTGGGACTCAGATAGCCTCCACCACCCTTACAGGACTGGCTTCATTTACAGCCTTCACCACAAATATCTGGCAGCAACTCGGCCTCATCCTATTggctgctttttattattattattattattatttgattttaaacttttaagCTCATGATCAATGTTCAACCTCTCTGGACACCTACCTCACCTCGGAATGACCGGATACTGGTTGATTGATTGGACAGACATCTCAGCTTTTCAGGACAAGTTTAATCGTGCAGGTGAAAGAAGGGAAACACACCGTATCTGAAATGTTACTGCTTACAGAGAGGCAAGAGACTGCGTGCTTTGAACACTAATTTTTTGGAAATGTTCTCTGTTCTGGTTTAGGAATGTTGGGGGCTATGGTGTATTTTATTGGACAACATATTTTagtggtaattttttttccaaggtCAATTCATGGATCAGGGAAGTCTGTTGCTTGGTTGGGGGGGAGGGGAGACTTGTATGGGGTGtctaacaaattcaaaaaccaCTACATTACATATCATGTCGCATTACCTCAGTTGACAGCACTACAGTCACTCGACCAGCCGTCATTTACCCAGCCTGGTGCAACTAATGCATGACCACTGAAATGTGGCATACAGGTTGGGTCAGTAATAGtgatttcttttcattaatttatgtCCGTTATTTAAGGTCCtcaaatgccttttttttttttttttccctccctaaCCATGTTTGTGCTGTTACATAAAATGTGCTGATTTTCCACACATCCGTTGTAATTGCATTGAGGACTGGTTACTAATTTGTATTCCTTAGCTTACGTGAGGATGAAACATGGATTATGGGTAAACTTGAAAATCCTGATTTTAGTGCtaattgtattttgttttaatatttcaggtaccagtttgtattgtttttatacTGGTGATTTCATATGCTGCATCAAAACACTTTTACtcagatttgtgtgtgtctcaggctGGTGAGCATTTTCTAAATCTATTCTAAATAATGGGTGCAAACTGAGAAGCAATTTCAAAATATAGGAGCTCTGTTCAGTTCTACAGTTTTGAACAATGAAAGTGTTCTTGAACAGATTCCTCTGTGATTTTGAAAGATTGGCTGTACAGAATGAAACCATGCATATATGAAATATTACCTTTTTTGGATAGTTGCTGGAACTACCTGTTGTGTGGGattattcatgaaaaaaatgttttccttttttgaaatttatttggAACAGAAGTGACAAGGTctagatataaaaacatgttttgaactgaaattaaaataggCCTTTGAGTGAGTTGATTCCACACAGGAACCAGATGTTTTATGCTGATGTTGGAAACCCCAGCCTCAGCCTTTATAGGAGTTTACAGGTATGCCTGTGGGATTATTAGCATAATTGAGGCATTGAACTGTGCATtcctctgcttttatttctttaacactTAAAACTATGCTTGCCTGCTTGAACACCAAATAGTACAGACCTGGAAACCAGTGAAGCTTTTGCCTCACTATCGGTAACCATGGTTTTTGTTATATGGTTCcagcatatatatgtataatttttttgctgAATGGATTGTGAGGGAAGACAAAAGGGTCAGGGTTCACTAAGTATGCTGTTGACTCAGAGGCACAGATTCATTAATCTGCAGTTCCACCGATTCCTCATTTCATCATCAGCCATTGATTTCCTATTCGGTGAAATCTGACGTGCCATTTCAGCATAAGCGGGAGAAATATGTATCaacttttatatttctgtaattttataataaatgcttttattttgaa

Function

symbol description
arl5b Predicted to enable GTP binding activity. Involved in protein localization to Golgi membrane. Predicted to be active in trans-Golgi network.

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 5B isoform X2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07950 ARL5B; ADP-ribosylation factor-like protein 5B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304043.1 True 2833 mRNA 0.43 7 21934492 21945588

Neighbor

gene id symbol gene type direction distance location
cacnb2a cacnb2,cacb2 coding upstream 20260 21849641 ~ 21914232 (+)
LOC113540130 slc39a12 coding upstream 90608 21829024 ~ 21843884 (+)
mrc1a mrc1 coding upstream 105653 21807724 ~ 21828839 (+)
LOC113539992 tmem236 coding upstream 141291 21787190 ~ 21793201 (+)
LOC113540212 colec12 coding upstream 157671 21767052 ~ 21776821 (+)
malrd1 malrd1 coding downstream 29155 21974743 ~ 22035561 (+)
plxdc2 plxdc2,LOC107724400,LOC107659453,LOC107598695,LOC107684879 coding downstream 99428 22045016 ~ 22163581 (+)
nfx1 nfx1,LOC108268165 coding downstream 224744 22170332 ~ 22184685 (+)
smarcd3b smarcd3,smarcd3b,LOC108268163,LOC108442951,LOC103047704,LOC106578675 coding downstream 245098 22190686 ~ 22239624 (+)
abcf2b abcf2b,LOC108268161,LOC108440639,LOC103022164,LOC107684499 coding downstream 314404 22259992 ~ 22268392 (+)
G68687 NA non-coding upstream 16716 21914806 ~ 21917776 (+)
G68621 NA non-coding upstream 185173 21732946 ~ 21749319 (+)
G68523 NA non-coding upstream 447004 21486974 ~ 21487488 (+)
G68435 NA non-coding upstream 617977 21316255 ~ 21316515 (+)
G68313 NA non-coding upstream 700234 21234025 ~ 21234258 (+)
G68947 NA non-coding downstream 299000 22244588 ~ 22244825 (+)
G68955 NA non-coding downstream 437506 22383094 ~ 22387745 (+)
G68954 scrib non-coding downstream 447251 22392839 ~ 22397101 (+)
G68999 NA non-coding downstream 581740 22527328 ~ 22527556 (+)
LOC113540593 NA non-coding downstream 981222 22926810 ~ 22938741 (+)
LOC113540377 NA other upstream 172191 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 294335 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 610525 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 900739 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 1779715 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 704222 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 1372916 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 2082518 24028106 ~ 24106223 (+)
G69971 NA other downstream 2163207 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2913438 24859026 ~ 24871263 (+)

Expression


Co-expression Network