LOC113539982 (LOC108267206,LOC108440832)


Basic Information

Item Value
gene id LOC113539982
gene name LOC108267206,LOC108440832
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20579774 ~ 20582012 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304045.1
CAGCTCAGTggaagtaatttttttcttcttggtGGTGTGTGGTTATGGTACCACTGTTCCACTGTCAGATGAGGGCCGAGTGTTTTGTATGCTTTACTGTGTCTTCGGTATTCCTCTCACCTTCCTCCTGCTCTCCTGCATCACCCATGCCCTGGTGCCCAGACTGAGTCATGCTCCCATACGCCACCTTCAGATCTACTGGGGTCTGTCTCGCAACAAGTCGGCCCTGATTTACTGCGGAATATTAGCGGCGAGCACAGCGACACTGTTCTTCCTGCTGCCTGCTGTCAGTCTCTGTCTGTTGGAGAAAGACTGGAGCTTTCTAGAGTCATTCTACTTTTGCTTCATTTCGCTCAGTACCATCGGGTTGGGAGATTATCTGCCTGGACAGACGCACAGTTGGGCTGCACGGCAAGCACTGGAATTCGCCACTTCCTGTTACTTGGTGCTCGGTCTTGTTGTCTTGCTGGTTGTTATGGAGAGCTTCTGGAAGCTGCAGCAAGTGCAGGCCTTGGTGCGTCTCTTTGTTGGGTCTACAGCAGCCTCACTAAAAGAAGATGATCTTGATGAGCAGGCGCTCAGTGAATGGCCAGACAGCCATGATATTCCAACAGCGGACGTCCAGTTTAAGCCTCCTATCTCCATCATCTCACACCGCATATCTGACTTACCACCAACCCCTTCTGTGGAGGATGCATGTACACCATTCACGCCACAAGTGGCAAGTTACAAGAAGACCGTGCGTCCTCCACATCAGCCAGACACTGATCCAGACCCAGCTGATCAAAACAACTGATTACCAAAGTCAAATGCACATCTGTCTTGTTACTCGTTCCTGGGCTTTAAACCAAATCCTGCCTGATGCACCTCTGACACTCTGATAATCTCAAGGATTTATCTGCCTGCAGTCATTGCCAGAGTGTTGGAGATTATACAGGAATTTTAGGAATTTCCTGAAATAAGTGTTGTCTGCATCAAAATCGGTTCCCCACTGTTAAAGAAAATACTTCAtactttattttccatttaaagtTTCAATCCCATTATGAGCACAAACAATAGAGACATTCTTcaatacattattaaattaactgcataaatatatacagatgcTCAGAGTAAACTTGTAATATGTTTGAAAATTTTCTTTTAGTGTGTAGAGAAGTTCTGGAGTTAGTAATTTCAGAACATTTTTGTTGTGCCTAAGGCTATAAGAGTTGAACTCCAGTACATTATGGGTGGCAATATGGcattgtgatttattttcttatccAACAGTCACAAAACAATTAAACTATTTAATGAGGAAAAGATGGTACAAAATTGGTACAGAAATTGAGGCAGTTAAAGGCCCAAGCAATGACGTTTGCGAGGGTTGTGAGATGGCAAAACCACCTCAGCAATCTTACAAGTGAATAACAATGGTTTATAACAACGATTTATTATAGCTCAGAGACTCAGTGGTTTATAAAATCACCAACACTGTAAAAAGTGTATCATTAGTAAATTGTCATTTTTCCAAGCCCTGCTGTACCATATTGTTTTCCCGTAATGGATTAAAACTCACTTGGGgctgtttaaataaacaaattgatGTGTTTTGCTGCACATTTGTAAAATATTCTAttctttcatctttttattctgtaatcttttttctga

Function

NR:

description
PREDICTED: potassium channel subfamily K member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304045.1 True 1662 mRNA 0.42 3 20579774 20582012

Neighbor

gene id symbol gene type direction distance location
taf6l taf6l,LOC107660726,LOC107679290,LOC107731936 coding upstream 2293 20570371 ~ 20577481 (+)
cth1 cth1,LOC108268299,LOC108440851,LOC103030689 coding upstream 9721 20567906 ~ 20570053 (+)
mta2 mta2,LOC107679264,LOC107660724,LOC107709145,LOC107731904,LOC107558444 coding upstream 14357 20549680 ~ 20565417 (+)
eml3 eml3,LOC107558446,LOC107731903,LOC107679271,LOC107660723,LOC107709062 coding upstream 35026 20504764 ~ 20544748 (+)
si:dkey-28a3.2 LOC108267583 coding upstream 83019 20485644 ~ 20496755 (+)
ehbp1l1a LOC108267830 coding downstream 5600 20587612 ~ 20630986 (+)
si:ch73-40a2.1 LOC108267785 coding downstream 55216 20637228 ~ 20649186 (+)
rab1ba rab1ba,LOC103373258,LOC107679256,LOC100695098,LOC108242295,LOC106532007 coding downstream 70563 20652575 ~ 20660555 (+)
rce1a rce1,rce1a,LOC107683501,LOC107731886,LOC107679240,LOC107710076 coding downstream 100696 20682708 ~ 20692222 (+)
cd248a LOC108268330 coding downstream 153815 20735827 ~ 20739174 (+)
G67958 LOC108267586 non-coding upstream 98019 20480600 ~ 20481755 (+)
G67827 NA non-coding upstream 304099 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 613886 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 662605 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 665371 19911739 ~ 19914403 (+)
G68054 NA non-coding downstream 53336 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 110251 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 282866 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 606519 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 623733 21205745 ~ 21209324 (+)
fcer1g LOC100305060 other upstream 424997 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 512554 19990684 ~ 20067220 (+)
G66864 NA other upstream 1721122 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2371210 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2436143 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 438246 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 732206 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1047064 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1170404 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2067798 22649810 ~ 22652447 (+)

Expression


Co-expression Network