dtx4a (dtx1,LOC108267695,LOC108440124,LOC103026639,LOC107558401,LOC107731926,LOC107597891)


Basic Information

Item Value
gene id dtx4a
gene name dtx1,LOC108267695,LOC108440124,LOC103026639,LOC107558401,LOC107731926,LOC107597891
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20352720 ~ 20372376 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304048.1
GTGGGTATGCGCGTGCATCAGTGCGGCTGCTCAGCCTCACACTTGAGTGATGCTGAGGTACAAAGCGAAACGTCCATGTTGTGAGCTGTTGTGAATCCTTAGAGAGACTGCTGCAGGAGACCAGATGAAGACAGCGCTGTGGATGTGACGCGGTTCCTTTCCTTCTCcgcaggtgtgtgagtgtgagtgagtgtgtgtgtgtgtgtgtgtgtgaaatgttgcTGGCCTCGGCGGTGGTGGTGTGGGAATGGCTGAACGAGCACGGCCGCTGGAGGCCCTACAGCCCGGCTGTGTCGCATCACATCGAGGCGGTGATCCGCGGAGAGACTCGCGGCGCAGGCAGTGTAGCGCTCGGCCAGGTCGACTCCAGACTGTCGCCCTACATCATCGACCTGCACTCCATGCACCAGTTCCGCCAAGACACCGGTACATTGCGACCAGTGCGGCGGAGCTTCTATGACCCGCGCTCGGCTCCAGGTCAGGGCTGGGTGTGGGAGTGGGAGAACGACTCGGGCACATGGACGCCGTATGACACAGAAGTGGGAATTGCCATCCAGGCAGCACGCGAGCGCCAGCAGCCATGGCTGGACCTGACGCCGCTCGGCTTCTGCTATCTTATCGATCTACAGGGCATGACGCAGATCAACCGGCAGACACAGCGCCGGCGCCGTATCCAAAGACGATGTGACTTGGCCTACCCGCTCGTCTCAGGCCCTCTGCCTAAGCCTCATGCCTGGACGTCCAATGGGAGTGCAGCACACTCGGGTATGAGCGTGTCTGGGATCGGAGGAGGAAACGGAAGCGCGTACCCTAGTGGAGCCCTTCCTGCTTCAGCAATCACTTCTCTTGGTCAGCCTTGCTCATGTCAGCAGTGCATGCTGGTCCTGGGTGTCAAAACCACAAGCATGGCGCAGACTCTGGGCCGAAAATCCATGCCCCTGCCCAGGCCGAGGAGCCCAAAAACTGCCCAGCGGGGCCACTCGTACTCACTCACTCTGCCACACAGGAACTCCACAACAGCCGGAGGGTTTGCACACTCACTCTCCTTGCTGGACTCGGCCACGGCTGCTCTGTCTATTTCCTCCAcccgtcctcctcctcctgctgttcCTCCGCCTCCTCCACCTTCCTCTACTCCTCATGCTACCTCTCCACCAAATCAGACATCCTCCAGTGCTCTCATCTCCACAACTGCCACCTGTGCCCCAACCCCTTCAGCCCGGGTCTTGGGCCCTGTGTCTTCAGCAGCCTGTGCCGCCCCAGTGCCACCCCGTGCCAGCCTGGCAGGTCTCAGCCGTCCCGCACTGCAGAGGATCGCCATGGCACAGTCACGGGCACTTATCGCCTCCGGAGTCCCAACAGTCCCTGTTAAGAACCTAAATGGGTCCAGTCCTGTTCACCCAGCCTTGGCTGGCATAACGGGTATCTTGATGAGTGCCGCAGGACTTCCTGTCTGCTTGACCAGGCCACCCAAATTGGTGCTCCACCCCCCACCTGTGAGCAAGAGTGACATCAAGCCTGTGCCTGGCCTCGGCCACTGCTGCCGCAAAACCACCAAGAAACAAGCCCGCAAAGGCAGGACTCCTGAGGAAGTTGTGAGAAGGTACCTGCAGAAGGTCCGCAACCCTCCAGAGGAGGACTGCACTATTTGTATGGAGGCTCTAGCAGGTCCCTCTGGCTACAAAGGCCCTGGCGTGGGCGGCATTTCCCGGGCAGAGTCGGTCGGCCGTCTGTCTCAGTGTGGGCACCAGTACCACCTGCAGTGCCTAGTGGCCATGTACAACAATGGCAACAAAGACGGCAGCCTGCAGTGCCCCACCTGCAAGACCATCTATGGAGTGAAGACTGGAAACCAACCACCAGGCAAGATGGAGTATCACGTTATCCCCCACTCACTGCCCGGGCACCCCGACTGCAAAACCATCCGGATTATCTACAACATACCCCCTGGCATTCAGGGCCCTGAGCACCCAAACCCTGGCAAGCCCTTCACAGCACGTGGATTTCCCAGACACTGCTACCTCCCTGACAGTGAGAAAGGCCGCCTAGTGTTGAAGCTGTTGCTGGTGGCGTGGGACCGCAGGCTGATCTTCTCTGTGGGAACCTCCAGCACAACTGGAGAGACCGACACAGTCATTTGGAATGAAGTCCATCACAAGACGGAGTTTGGCTCCAACCTGACGGGCCACGGCTACCCCGACTCAGGCCACCTGGACAACGTTCTGGAGGAGCTGAGGGCACAAGGTATCACTGAGGAAGACTGTCTGAGGGACTGAGAGAACGAAAGGGACGAGACGTTGCGCCAAGTTGCGATCCAGAGATGAAATTTTGGAAGCAACTGGAACTTTAAGACTTTCCTCTGAAATTGAGAATCCAGTGTTaaagaaactggagaaactaGGAAAAGTCACAAACTCATTCCATTCTGTGATACTGACCcttctgatgatgatgaaagcTTTGAAACCAGATTGTGACCCACTTCTGCTTCAGAGCTGGTTTAACTGACTTGGACCATGAGGGCACATGGGTACAAACTAATTTACTATTGCTGGTGTCTGTTCAACAATTTCTCGTATTGTAGTTGTGTGAAGGGTACTCCACACTGAGGTACTTCTGTGCATGTAAGTATAACATTTGGTGGAATAAGTCCTTTTTTTGTATGACGGAGGCCCGTTTTTTGCTATGAAGCTCCAGTGGTGGAAGTTTCAGATGGAATGTGAATGTttactgccctctagtggcacTTGATTATACATTCCATCCATAATCATAGTACAGTCACTTGGTTTTATCATgggtttcatttttacttttatttacactACATTAATGAATTACTTTTATACTCATTTTAAACCTGTTGTAcctttattttatgttatagaTATGTAGTTCATAACTTAGAAGCCAATGATTTGGCATGATTTTGGATAATAAAGCCAATAAATCATTGTCGAGGGCTGCTAAACCTGTCCTTGGACATTAAACTCAACCCAGTTCAAGTATTAATCAGTATTAAAGCCAGCTAACAGTGCAGAAAAAAAGGGGGGTgatgacaaacacacaaaatggccAGTTTCCTCCTAACCCTTTAATTCACAAAGCCACATGGAAAGCATGAGtttatgaaaataaagttttattgtgATTAGACATGCAACCGGAGATTAAATGTACAACATATGGACCAGCGCTAAATTTAACCACGTTGCAGATAAATGTGATCTACGACATGTCAGActtgtgtagaggtttgacctAATGTCATGTAACTCAAGACACCATATTGGTCATTGGGGAGCGGTGTTAACTACCAGCCTGGAGAACGTGTGCTTGCTTTGGAACATCTGGTCCTACTTTGTGGGTAGATCTGTGCTGTGGTCTCCAGTTACTTTTCTAGTCAGTCATTGGTAGGTCCATGATGGACacgtttacaaaaaaaaaagtattgttgTCAAGACATTTGagcatgtgtgtacatgcaAATATAAGCTTACATTTATAGTTGAAGTATTACTGtgtgctgtatgtgttttatgtacACATGTTCTGACTCAGTACCATCTTTTTTAAGTGTTGCAGCAGCTCAGTAAGGCAAGCACTTCtaactctttttttattattattttaatttgttatacattttgatttttagtaATGTCTTATaagctgtatgttttttttgtactgtgAAGTTTTACTCACTGATTGCACTTGTATTTTTTCATGATAGTTGCTCTGGTTATTGCAGTAAAATTTCAGCCAGGAGGAAGCTGCAAAGAAACAGTGTATGGAGCTAGAACTATTGTTGCTGTgtaatataaaactgtacagAATAACGTGCATATTAAATAGCTGCTGGAATActgaatgaatattaaaaagaaGATATGTGTAGGGTTTGTTCATTTCAAA
>XM_034304049.1
GAAACGGGCCAGCGCACGcaaaacacatcacatcacgGCGTTAAATACAcggtgtgtttttaaatgggGAGAATTCCTGTAGTGAAACTGGAAGGTGTCAGTGCCATGAACCCAGGACCCATCATGCGATTAACCATCATGTCAGCATAGCTTTATCATTTGAGCGGATTATCTCAGTAACTCGagagtagctagctagctctgcTGAAAaactggacacacacatacacacacaaacacacacacacacagacacagggacacAGGCGCGCGCGGATGCACACAAGCTTTTCCCAAATAAAGATGTGTCTGCTAAAGGAGCATGACTCGCCTTGGCTTATTTGAATGAACTCGCAGCTAAACGCACAAGGTCCTTTTCAGGTgtgtgagtgagtgtgtgtgtgtgtgtgtgtgtgaaatgttgcTGGCCTCGGCGGTGGTGGTGTGGGAATGGCTGAACGAGCACGGCCGCTGGAGGCCCTACAGCCCGGCTGTGTCGCATCACATCGAGGCGGTGATCCGCGGAGAGACTCGCGGCGCAGGCAGTGTAGCGCTCGGCCAGGTCGACTCCAGACTGTCGCCCTACATCATCGACCTGCACTCCATGCACCAGTTCCGCCAAGACACCGGTACATTGCGACCAGTGCGGCGGAGCTTCTATGACCCGCGCTCGGCTCCAGGTCAGGGCTGGGTGTGGGAGTGGGAGAACGACTCGGGCACATGGACGCCGTATGACACAGAAGTGGGAATTGCCATCCAGGCAGCACGCGAGCGCCAGCAGCCATGGCTGGACCTGACGCCGCTCGGCTTCTGCTATCTTATCGATCTACAGGGCATGACGCAGATCAACCGGCAGACACAGCGCCGGCGCCGTATCCAAAGACGATGTGACTTGGCCTACCCGCTCGTCTCAGGCCCTCTGCCTAAGCCTCATGCCTGGACGTCCAATGGGAGTGCAGCACACTCGGGTATGAGCGTGTCTGGGATCGGAGGAGGAAACGGAAGCGCGTACCCTAGTGGAGCCCTTCCTGCTTCAGCAATCACTTCTCTTGGTCAGCCTTGCTCATGTCAGCAGTGCATGCTGGTCCTGGGTGTCAAAACCACAAGCATGGCGCAGACTCTGGGCCGAAAATCCATGCCCCTGCCCAGGCCGAGGAGCCCAAAAACTGCCCAGCGGGGCCACTCGTACTCACTCACTCTGCCACACAGGAACTCCACAACAGCCGGAGGGTTTGCACACTCACTCTCCTTGCTGGACTCGGCCACGGCTGCTCTGTCTATTTCCTCCAcccgtcctcctcctcctgctgttcCTCCGCCTCCTCCACCTTCCTCTACTCCTCATGCTACCTCTCCACCAAATCAGACATCCTCCAGTGCTCTCATCTCCACAACTGCCACCTGTGCCCCAACCCCTTCAGCCCGGGTCTTGGGCCCTGTGTCTTCAGCAGCCTGTGCCGCCCCAGTGCCACCCCGTGCCAGCCTGGCAGGTCTCAGCCGTCCCGCACTGCAGAGGATCGCCATGGCACAGTCACGGGCACTTATCGCCTCCGGAGTCCCAACAGTCCCTGTTAAGAACCTAAATGGGTCCAGTCCTGTTCACCCAGCCTTGGCTGGCATAACGGGTATCTTGATGAGTGCCGCAGGACTTCCTGTCTGCTTGACCAGGCCACCCAAATTGGTGCTCCACCCCCCACCTGTGAGCAAGAGTGACATCAAGCCTGTGCCTGGCCTCGGCCACTGCTGCCGCAAAACCACCAAGAAACAAGCCCGCAAAGGCAGGACTCCTGAGGAAGTTGTGAGAAGGTACCTGCAGAAGGTCCGCAACCCTCCAGAGGAGGACTGCACTATTTGTATGGAGGCTCTAGCAGGTCCCTCTGGCTACAAAGGCCCTGGCGTGGGCGGCATTTCCCGGGCAGAGTCGGTCGGCCGTCTGTCTCAGTGTGGGCACCAGTACCACCTGCAGTGCCTAGTGGCCATGTACAACAATGGCAACAAAGACGGCAGCCTGCAGTGCCCCACCTGCAAGACCATCTATGGAGTGAAGACTGGAAACCAACCACCAGGCAAGATGGAGTATCACGTTATCCCCCACTCACTGCCCGGGCACCCCGACTGCAAAACCATCCGGATTATCTACAACATACCCCCTGGCATTCAGGGCCCTGAGCACCCAAACCCTGGCAAGCCCTTCACAGCACGTGGATTTCCCAGACACTGCTACCTCCCTGACAGTGAGAAAGGCCGCCTAGTGTTGAAGCTGTTGCTGGTGGCGTGGGACCGCAGGCTGATCTTCTCTGTGGGAACCTCCAGCACAACTGGAGAGACCGACACAGTCATTTGGAATGAAGTCCATCACAAGACGGAGTTTGGCTCCAACCTGACGGGCCACGGCTACCCCGACTCAGGCCACCTGGACAACGTTCTGGAGGAGCTGAGGGCACAAGGTATCACTGAGGAAGACTGTCTGAGGGACTGAGAGAACGAAAGGGACGAGACGTTGCGCCAAGTTGCGATCCAGAGATGAAATTTTGGAAGCAACTGGAACTTTAAGACTTTCCTCTGAAATTGAGAATCCAGTGTTaaagaaactggagaaactaGGAAAAGTCACAAACTCATTCCATTCTGTGATACTGACCcttctgatgatgatgaaagcTTTGAAACCAGATTGTGACCCACTTCTGCTTCAGAGCTGGTTTAACTGACTTGGACCATGAGGGCACATGGGTACAAACTAATTTACTATTGCTGGTGTCTGTTCAACAATTTCTCGTATTGTAGTTGTGTGAAGGGTACTCCACACTGAGGTACTTCTGTGCATGTAAGTATAACATTTGGTGGAATAAGTCCTTTTTTTGTATGACGGAGGCCCGTTTTTTGCTATGAAGCTCCAGTGGTGGAAGTTTCAGATGGAATGTGAATGTttactgccctctagtggcacTTGATTATACATTCCATCCATAATCATAGTACAGTCACTTGGTTTTATCATgggtttcatttttacttttatttacactACATTAATGAATTACTTTTATACTCATTTTAAACCTGTTGTAcctttattttatgttatagaTATGTAGTTCATAACTTAGAAGCCAATGATTTGGCATGATTTTGGATAATAAAGCCAATAAATCATTGTCGAGGGCTGCTAAACCTGTCCTTGGACATTAAACTCAACCCAGTTCAAGTATTAATCAGTATTAAAGCCAGCTAACAGTGCAGAAAAAAAGGGGGGTgatgacaaacacacaaaatggccAGTTTCCTCCTAACCCTTTAATTCACAAAGCCACATGGAAAGCATGAGtttatgaaaataaagttttattgtgATTAGACATGCAACCGGAGATTAAATGTACAACATATGGACCAGCGCTAAATTTAACCACGTTGCAGATAAATGTGATCTACGACATGTCAGActtgtgtagaggtttgacctAATGTCATGTAACTCAAGACACCATATTGGTCATTGGGGAGCGGTGTTAACTACCAGCCTGGAGAACGTGTGCTTGCTTTGGAACATCTGGTCCTACTTTGTGGGTAGATCTGTGCTGTGGTCTCCAGTTACTTTTCTAGTCAGTCATTGGTAGGTCCATGATGGACacgtttacaaaaaaaaaagtattgttgTCAAGACATTTGagcatgtgtgtacatgcaAATATAAGCTTACATTTATAGTTGAAGTATTACTGtgtgctgtatgtgttttatgtacACATGTTCTGACTCAGTACCATCTTTTTTAAGTGTTGCAGCAGCTCAGTAAGGCAAGCACTTCtaactctttttttattattattttaatttgttatacattttgatttttagtaATGTCTTATaagctgtatgttttttttgtactgtgAAGTTTTACTCACTGATTGCACTTGTATTTTTTCATGATAGTTGCTCTGGTTATTGCAGTAAAATTTCAGCCAGGAGGAAGCTGCAAAGAAACAGTGTATGGAGCTAGAACTATTGTTGCTGTgtaatataaaactgtacagAATAACGTGCATATTAAATAGCTGCTGGAATActgaatgaatattaaaaagaaGATATGTGTAGGGTTTGTTCATTTCAAA

Function

symbol description
dtx1 Predicted to enable transferase activity and zinc ion binding activity. Acts upstream of with a negative effect on Notch signaling pathway. Acts upstream of or within glial cell differentiation and neuron differentiation. Predicted to be located in cytoplasm. Is expressed in nervous system and spinal cord neural tube. Orthologous to human DTX1 (deltex E3 ubiquitin ligase 1).

NR:

description
Protein deltex-4

GO:

id name namespace
GO:0010001 glial cell differentiation biological_process

KEGG:

id description
K06058 DTX; deltex

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304048.1 False 3918 mRNA 0.50 8 20353412 20372376
XM_034304049.1 True 4121 mRNA 0.50 9 20352720 20372376

Neighbor

gene id symbol gene type direction distance location
trnaa-cgc NA coding upstream 235 20352414 ~ 20352485 (+)
si:ch211-119e14.1 NA coding upstream 843 20349428 ~ 20351877 (+)
coro1b LOC108267697,LOC108440123,LOC107679286,LOC107597893,LOC107710519,LOC107683505,LOC107558435 coding upstream 7039 20333678 ~ 20345681 (+)
nectin4a LOC108267696 coding upstream 20520 20318437 ~ 20332200 (+)
trmt10a trmt10a,LOC107683564,LOC106608639 coding upstream 38654 20307130 ~ 20314066 (+)
msantd1 msantd1 coding downstream 1887 20374263 ~ 20377870 (+)
rgs12a LOC108268015 coding downstream 6399 20378775 ~ 20411656 (+)
rtn3 rtn3,LOC108267754,LOC108440822,LOC103032175,LOC107679257,LOC107731898 coding downstream 86465 20458841 ~ 20479797 (+)
si:dkey-28a3.2 LOC108267583 coding downstream 113268 20485644 ~ 20496755 (+)
eml3 eml3,LOC107558446,LOC107731903,LOC107679271,LOC107660723,LOC107709062 coding downstream 132388 20504764 ~ 20544748 (+)
G67827 NA non-coding upstream 77045 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 386832 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 435551 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 438317 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 463995 19888178 ~ 19888725 (+)
G67958 LOC108267586 non-coding downstream 108224 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 262972 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 319887 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 492502 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 816155 21188531 ~ 21189134 (+)
fcer1g LOC100305060 other upstream 197943 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 285500 19990684 ~ 20067220 (+)
G66864 NA other upstream 1494068 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2144156 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2209089 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 647882 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 941842 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1256700 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1380040 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2277434 22649810 ~ 22652447 (+)

Expression


Co-expression Network