LOC117597185


Basic Information

Item Value
gene id LOC117597185
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6775979 ~ 6778040 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304050.1
TCAAGCTGCATATGCCAGTGGAGATCAAACCTGAGCTGCAGATAAACTGTCATCCTGAATCCGATATGCCTGGAATAGAGAACAGCAAAGCTGAgtccagagagacagacagaaatgaactgGGTGGATCAGCTGCCACGTATCGACTGATCAGTGTCCTCAGCCATGTTGGAAGCACAACATTATGTGGACATTATCTGAGTGATTGTTCCAGTTCCAGTCAGCAGTGGATGACCTACAATGACCAGCGGGTCACTCTGACCACCGAGACGGACGTGTTAAAGATGAGGTCGACTAGCGCCTATGTGCTCCTCTATGAGAGAGTTAGCACTGGCTGAAGCCCTTCCTCTTCTCTAGAAAGATGCAAGAAGATGCGGTGGGAAAGATGTCGGGGCAAGCGACAGTGTGGATGGCTTGGGGCCACGCAGGGGTGATGCAGATGGAAGATGGAAACTACGCGGGATTTTGCTAAGTATCTTTTGCGACGACGCTTTTGGCCTAGTGGAATTCTCATTGTGAGTTAAGTATGAGGCGTGTTAACGACGCTCATGTTAACGACGCTCCACCGGTGTAGCAGGTGTCTGTCGCAGCCAGACGACCTGCACCTGTGGGTTCGGCCCCTAAAACCGGTGAGCAGCTCGATAACTGCAAAGTAACAGTCCAGGAAGTGATCCTGAACTCTAGAGCTCCTAGTACGCAGGCCATGTATGGTCTATATGGGCATAGAGCATACATGTGGGTATGTATGCATTTTGTGGGCACTGCTGTATAGTGGCAAATCGCCATCTATGCCGAACGTGtatgtggcagccattttggctAACCACATCACAGTGGATAACATCTTGTTGGCAGCACATGGGCTCATAGCAGTGTTGTGAGCTAAGGAGGTAAACACCTCCATTTGCCAAACTCCCCCAAGAGCCAAACTGTTGGTGATAAATTCGCCCTGCGTGCTTTACTGGCCAGATGATTCTGGAGTGACCTTGTGGCTGAACCCAGGGTTCCTGCCTAAGGTTGTTTCTTGGACACTGTAGAATTGTACCTAAACacttctgctgtaatcataaacacccTGATGTTCATAAAGAACATCTTTTCAACACCCTCAGGACTGTCTATATAGTATATGATTGaggaagagtaatgatttataagctcactatctggtgtcacccagaagaggatgggttcccttttgagcctggttcctctcaaggtttcttcctcatgtgtcatctgagggagtttttccttgccactgtcgcctctggcttgctcattagggatttaaATACATCCAGATTTTTGGGACGGAATGTGTGCACAGTCCCGCTATCTGGATGTTAAGCACCACCCTTGGCAGTTATGAGATGCTCATAGTAAGCGATCTACTGCCAATTGATTGTCTGTCGGAAAATGTGTTGTCTCCAGCTTGAAGatcagcaaaaataaattgGATCTTACAGTATGTGTTTTCTTTGGGTCTGTTTTTAGTCCTATATGATCCTTAATAGTTTTTGATGTCTGACTTTGGAGCAGGCGCATTACGCAGGTAATGATGGTATATTGCACACGAACTCATAATCCTAGTTTGGTCTGTAACTAGCATTCGCAGCTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304050.1 True 1623 mRNA 0.47 4 6775979 6778040

Neighbor

gene id symbol gene type direction distance location
LOC113547256 LOC108267788 coding downstream 163137 6602800 ~ 6612842 (-)
mylk4a LOC108268043 coding downstream 215653 6518463 ~ 6560326 (-)
trnak-cuu_3 NA coding downstream 595020 6180887 ~ 6180959 (-)
ripk1l ripk1 coding downstream 789764 5972624 ~ 5986215 (-)
LOC113547282 LOC108267872 coding downstream 808675 5956127 ~ 5967304 (-)
LOC117597065 NA coding upstream 316 6778356 ~ 6779988 (-)
LOC117597066 NA coding upstream 1955 6779995 ~ 6789815 (-)
LOC117597067 NA coding upstream 17045 6795085 ~ 6798486 (-)
LOC117597003 NA coding upstream 32089 6810129 ~ 6812432 (-)
LOC117597000 NA coding upstream 59439 6837479 ~ 6868065 (-)
G60503 NA non-coding downstream 133794 6641971 ~ 6642185 (-)
LOC113547257 NA non-coding downstream 173753 6587543 ~ 6602226 (-)
trnae-cuc_12 NA non-coding downstream 332164 6443744 ~ 6443815 (-)
G60333 NA non-coding downstream 380908 6394865 ~ 6395071 (-)
G60328 NA non-coding downstream 385902 6389703 ~ 6390077 (-)
G60672 NA non-coding upstream 7287 6785327 ~ 6792952 (-)
G60669 NA non-coding upstream 100604 6878644 ~ 6881335 (-)
G60727 NA non-coding upstream 452614 7230654 ~ 7230904 (-)
G60726 NA non-coding upstream 464085 7242125 ~ 7246436 (-)
G60846 NA non-coding upstream 663222 7441262 ~ 7538818 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 816434 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 1281940 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 1689622 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 1830958 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 2128099 4642020 ~ 4647880 (-)
LOC117597002 LOC107721237 other upstream 103342 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 1674570 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 1793456 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 1861428 8639468 ~ 9528825 (-)
G61478 NA other upstream 2205194 8983234 ~ 8984453 (-)

Expression


Co-expression Network