LOC117597187 (LOC108261662)


Basic Information

Item Value
gene id LOC117597187
gene name LOC108261662
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5020107 ~ 5025400 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304054.1
ATCTTCGGCTCAAACTACTGCACATCATTATGGCTACTAGATTTCAACAGGCATCTCTGACTGTACATGATTTAATCCAGAAGAGTAAATTAATCACTGAAGGCTCACCTGCACGATATCGTCTCCTAACAACCAGAAGTAATCTTGATGAAAACGGCTCAGTGAGAAAATGGACATTTGGACAGCGAGACAACAATATGCAAAACAAAATCCTACTGATTGTAGGAGAAACCGGAACAGGCAAAACTACTCTGATCAATGCCATGGTAAATTATATACTCGGGGTGAAGTTTACAGATGAAGTGTGGTTTGAGATTACAGAAGAGGAAGGAGATAATCAAACGTCAGATcagtcaaaaacaaaaacaactgaaatCACTGTGTATGAGGTCTTTGCTCAAGACAACCCAATCTGCCTTACTATCATTGACACTCCAGGTTATGGAGACACCAGGGGAACAGAATATGACAAACAGATTGCTGAGAATCTGTACAAACTGTTTCAGAATGATACTGGAGTGAAAGAAATTGATGCAGTGTGTCTGGTAGTGAAGGCATCTGAGAATAGACTCTCTGACAGACAGCAATACATCTTTGATACTGTTTTGTCCTTATTTGGTAAAGACATAGAGAAcaatattgtcatttttttcactcattcagATGGAATGCCTCCAACAAATGCTCTTAATGCCATCAAGAAAGCAGGGATTCCCTGTAGGAAAGATGGAGGAAATGAACCTGAGAATTTCTTATTCAACAATCGTCAAACTGAGAAAAGGAGCCCAAAGTATAACAGAGCTCTCCAGACAGATTGGGAACTAACAGAGGacactttaaatgttttttttgcttcactgaatgaacagaacagaaaaagctTAGAGCAGACTGAAAGTGTTCTGACTGAGTCCAAACAGCTTGAAGCCTGTATTAATAATCTACAAAACCGCATTGACTTTGTAGAGTGCAAACGTAAAGAACTGGCTCAGATTCAGAAAGCCCTTGAGGAAAACCGAGAAAAGATTAAGAGAAATGAAAACTTTACTTTTACAGTCACCAcatattacaaagaaaaagttCCCATTGAAAATGCTTCATGGTGGGACAGAAAGGCCACCACTTCCTCTGTCTGTGAGGAGAACTGTCATGAGTATGGCTGCTGGTGTGCCATCGATGCCAGGTGGTGTTATGTCATGAAAAATGACTACTGCACTTCATGTACAGGTAAATGTCACTACAGCAAACATGTCAGAGAGAATAAGAAATATGTTACATGCAGCAAAGAGACCACAATGACATATAATGAGTTTAAAAAGCAATATGAAAGAAATGATACTTCAGCATCAGCTATCAAGTTTGACTCAAAGGCCTTTGAAAATGTCACAAAAGACATTGCAAGTAACAAGAAACAGGAAGAGGAGATGACAAGCATAGAGAAGAGACTGAAAGAAGAACTGATGaagactgaaaaggaaaaagctAAGCTGGTGGAAGAAGCCTGCAACACCATCCTGAAACTGTCTGAGATTGCTTTAAAGCCAGATTCTGCTTTCATTGTTCAGTCTCTTGACTTCTTGATCCCTCGAGCTGAGGAAACTGGAAGAGACGTTATTGTTCAGAAACTAAGAGAGCTGAGGAAAATTCCATCTGAATCACAGGAAAGAGTTAATGCTGTAATGGGGTATACAAGAGCAGGTTTCagtaaactgaaaaatgcttttCACTGGTAAAACATGAGTTTAGGAGATTAAACATGGCCATGTAACACATAATAAAGAAGGAATTATGAactatgaattatgaattatgaacaTATCTGTGCAGTTTTTGttcaatttaataaaacacattgtgtTTATTCAGTAATGCTGTTGTTcaagatttaatattttacttagttttggtaatcatttaaaactttttttgatGAGCCATTATGAATGAGTTTAAAGTAGAATTTGTCTTTTAATTAAAACGTTACCTTACCTATACCATATTACTTGTGAAGCTATACTGTTCGTGGATAgatgtttattcttttcttttaactTGATTTAGTTAATTAGCTTGTATTGATAAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC108261662, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304054.1 True 2083 mRNA 0.37 2 5020107 5025400

Neighbor

gene id symbol gene type direction distance location
LOC113547303 LOC108268222 coding downstream 2258 5013348 ~ 5017849 (-)
LOC113547304 LOC108268219 coding downstream 2300 4992589 ~ 5017807 (-)
LOC113547301 LOC108268219 coding downstream 37586 4974262 ~ 4982521 (-)
LOC113547302 LOC108268221 coding downstream 47015 4960991 ~ 4973092 (-)
c8a c8a coding downstream 141878 4866481 ~ 4878229 (-)
LOC113547224 NA coding upstream 75015 5100415 ~ 5104126 (-)
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding upstream 104297 5129697 ~ 5150222 (-)
dnm3b LOC108268313,LOC108413145 coding upstream 283461 5308861 ~ 5357290 (-)
LOC113547296 NA coding upstream 368477 5393877 ~ 5399388 (-)
fggy fggy coding upstream 385422 5410822 ~ 5426769 (-)
G59598 NA non-coding downstream 62186 4957717 ~ 4957921 (-)
G59559 NA non-coding downstream 105656 4870160 ~ 4914451 (-)
G59416 NA non-coding downstream 262342 4757431 ~ 4757765 (-)
G59398 NA non-coding downstream 341371 4677165 ~ 4678736 (-)
LOC113547239 NA non-coding downstream 428339 4590344 ~ 4591768 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 96736 5122136 ~ 5129619 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding upstream 154345 5179745 ~ 5212658 (-)
G59788 NA non-coding upstream 166760 5192160 ~ 5220686 (-)
LOC117597176 NA non-coding upstream 237084 5262484 ~ 5265109 (-)
G59823 NA non-coding upstream 297101 5322501 ~ 5329901 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 75086 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 372227 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 448280 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 763823 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 810001 4171199 ~ 4210106 (-)
LOC113547297 NA other upstream 57408 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 453142 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 874849 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1855982 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3427210 8452610 ~ 8551855 (-)

Expression


Co-expression Network