LOC113547301 (LOC108268219)


Basic Information

Item Value
gene id LOC113547301
gene name LOC108268219
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4974262 ~ 4982521 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304062.1
AGGTGAATGTTAAGTGTTAGGGTTaaaacttttacacttttaaaacGACAGCAATTGCCTTGTATATTATCACATTATAATTACAgtttattgttctttaatttacCCAAATATTATGTCCTGTGTTTtggactttttaaaattttttattgacGCAATTTTAGTTTAcgtgtatttttatatcattacaCATTGCTGTATAGTGCTAGCAATTGTGATTCAAAATTTATTCTGTGCGAAGATAAATATTAATTCAACGCAAACATGTGCGATCATTTGCATAACTATAGCTAAGTTTTCCTAAATCCTGAATCATTGCTATCACTGAGTTTTCCTAAATTATTCATATTAGTGGCTGCCAAGACTTTTTATTATTGACAAGCCATCGACTCAGAAAGTCCTGTCGGAAATTCGTAATTGCAAAGTGAACGAACATCAATACTACCACAATGTTGTAATTACAAGTTGGGAATTCTTCTATGAGCCCTGGCTTTCTGAGATGGGGGCGTGTCAATAACAAAAAAGTCATCATGGTCAGCAATATAAATGTGACTTCTACAGCAGATGGTACGTTTTACATGTAAGTGGTATTTCTGGATGTTaagctctttattttcttttagtaaGGCTAAATTAACTTcttgccatttaaaaaaaaaaaaaaaaaaaacaaaagcacatgaacacacactacGTCATAATTACCACCCCCGAATTCATACACACAAATTTCCGAGGAAGGCAGCAATAGGAAGATACGAGTTCCTGATTGTAATTATGACATTGTGGTGACCTTCAAGTGCGCTTACTTCGTAAATGGGACATTCCACCATTAGAGCACCACTGAGATGAGGTGTAGACTGTTTTCACTACGTGTACCCATCTATCTCATTCACTTTTTGCAACATCAAATGCCGAGCAAACTTTGAAGATGTTGCTTTTGCGTCTGATATTCTGAGGTTCTGCATGTTGCAGCACTTTTGTTGTTGCAAGCAACACAATCTTTCTAGAATCATAAACATTAAAAGTGCCTCTGTCGTCTGGGAGTGAGCGGCTTTTCAACCTTGTCGTTGTCTAGTGCACGGTGATTGGCTGAAGATTGATGCTGATTTgctgaaaattaaatgtttgttagGGGAAGAATAGTTGATTCAAGCTCAAACGTTTAcgtgtatatttttttcatttttggtttaaaaaaatggcaaacCTTGTGACTCAAGTCCAAGTGACGTCACTGACGTCAAAGTCAAAGTCGAGTTGCAAGACTTCCTCAATTATATTGAGTTGAAAGTCAGCAAATTTGTGACTCGAATGCAAGTCATGTGACTCGAGTCCACAACACTATACTAGTATTTGGTACGTGTGTaatatatatggtgtatgtgtAAACAGTCAGTAGCTCAATGGCATGAAGCGTGAGTTGATTAAATGTAACATCGTGTAAAGCAACCATTGTGAACGACACTAATCAGTGTTACACAGCTATGTTACACTACAGTAACCTCACAGAGCCCTGGTGTGATCGACAACAAGTGGTCTGAGACCTCATCAACATTCGAGTTCTTGCCTTTCGAGCTTTTGAGTCCACTTTTATTGCACTGAGGTCATTTGCAGCTTTCTTTAGACCGAGTATGATTCATAGTACTAAGTAAAGAAGTGgatgtgaaaacacacaaaggTGGCATCAGTTACCTTGACTTTTTCAGTGTGTGACTTTTATTATGAAAACCAGACCAGGAAGTAGGTAAGGAGCCAGGCATGCTAGCAGCTTTGAGTATCATCAGTAAGCCTGGTTAAGATGGTGACTAAGTGTTGTGTGCCGGAATGCAGAAACAAAGGAAGCCGCTCTTCTAGGCAACATTTCCACCGCTTTCCGAGAGATGTGGAGCTTTGCAGGCTGTGGCTGGCAGCCATGAAGCACCGCCTAGCTGCAGGTGTGATCAGCAGAGACAGTGTGAAGCACCTGCGAGTGTGCAGTGATCACTTTTTAGCTGAGGATTACAGAAAATTCTCCTTATATAACGCTCTGAAACCTGCTGCtgttccttctctttttccacAAAGTGAAGCTGAAGCTGAGGACCAAGATTGCCACCTGGAAGTTGGGCCACGTCCATCGCTACCAGTGCAGTCTGAGGTTGTTTCATTTCCTCAGCCTAATCACAAACTCGCGTTCACCAATCTACACGACTCCACATCATCTTGCACTTTTGTTAATCCGAGAATGAACAGAAAAGGAAGATCTCAGAAGatgtcTTTCGGAGAAGAAAACACACCTACTCCACTGTCAGCATGTTCCGAGGTGGAAGAGAAGTCATGGCGTGAAGCTGTCAAGAGCCTTCAGACCTATCAGGAAACTAGCATTTTTAAGAGCAGTGAGGTGCTGGTGAACACACAGTGTTTGCTGGAGCTCTTCCAGTTCTGCTGGCTTTGTCAGAAAGAGTGCTGTATTACCATTGAGGGCAACGAGAAGCTGTTTTCAGTCACGCAGGACTGCCAGAGTTGTGGCTACCACAGAGACTGGAGGAGTCACCCGCCTTCAGCCGAACCTGCACACACCTTTCATAAAGAGGAAGAACATATACTTGAGGATGAGGATGGTGAGGAGGTTGTGGTTCACATTGTGTCATCAGATAACGAGTGCAGTGAGCAGGTGTTTATTGAAAAGGATGGATCGTATTTATCTAGTGATGATGAAGAAGCAAGTTTGCAGGAAGaggaagtgaaaaagaaaagaaagaggacGTCTAAACGTAAACACAGTTCAGATGAGTGGGAGCCATGTTTAGATGAAGAGGCCACAGACTCTGATGTGTCCATGGATGAAGACCTGTTCACAGCTTTAAAGGAGGATGGTCAGGGTAAACTTGTGGTGTGGTGTACACAATGTGGGACCGAGGCCTCGCTCTCCTGTTCTGTCCATCGACACAAAAAAGCGTTCTGCTGTGCTCAGTGCAGTGCAGGTGACGACATTAAAACACATACTTTTGAAACACTACGTATTCGGTTTGATGACGTCGGCAGTTTTCAGAAACATGCTGAACAGGAGCACGGAGTCAAACCATTCTATAGACTGTGTCAGGATTGTGGCAAGTTTGTTATAGCAGATCCTGAATCCCGAGGTTTAAAAGAACATAAATGTGAACACAAGTCCAAATTTATTATCTGTCCAGAATGTGGGAAAAGATTCCTCACCAAGGTCGGACTAAAGTCGCACTACACTCAGCTCCATTCGGATTATGATCACCCGTGTAAATACTGTCTGAAGGTCTTCAAAACCAGGTCAATAAAACTGGAACATGAGCAGACTCATCCTAAAGAAAAACAACCATACAGCTGTCCAGATTGTCCAGAGAAGTTTAGCAACATTCACAAACGCAATAACCATGTCATATCTCACCGAGGTCcacataaatatgtgtgtgatgtatgtgagAAAGGCTTTAAGGACATCGTCAGGTTAAAAAGGCATGAACTCATCCACTCTGGAGAACAGCCTTTCAAATGtcaagtgtgtgaatgttccTTTAACCAAAAGGAAAACCTCACTTCCCACATGCGCGTCCACACTGGAGAGAAACCTTTCATGTGTGAGCAATGCGGAGAGTGTTTTAACCACAGCGTCAGTCTGAAGAACCACAAGCAACGACACCATGACTCGAGTTTGACTCATGATGAAGTAGTGATGCAGTGATTTATAAAAACACTTGATGTACTGAATGCAGAGGTATTAAAACTGCACTGTGGTTGCCTAGATTGAGGTGTTCCCAGTGGAACAGGGGATGCAGCCACAATTTAGACTTTGAAGGATTGCTGAGAAACATTTTGAAGGAGTCAGTTAATACTGATCAGACTGATAATAGAAATATGGCTGATTTCTTCTTTGTTTGATATTCTCACACTGCCTTTTCACAGATCTTGGAACAGTAGCtccattcattatttttatgacCATCATAAGCTATACACATCAGATTCATTTTTTCCTATTAAGAAATGGTGATACGTACATTCCAACACTTACAGTGTAAGTTATCCTCGATGTAATTCCTCAAgcagttttaaatgtattacCAAAAAGCTATTTAA
>XM_034304063.1
GCAAATTGTTGGAAAAGAAGAACAGATTTGTGGATCACCTGAGCAAATGTGTGGGCAGGATGACAGGTGAGGGTGGAGGACACCACCTACCTGTAAAGCAGGAGGCTGACAGCCATCATGCGCCTGAAGAAGAGGAGAATAACCCAGTTCCTGAAGTCAAAGGACCAAGATTGCCACCTGGAAGTTGGGCCACGTCCATCGCTACCAGTGCAGTCTGAGGTTGTTTCATTTCCTCAGCCTAATCACAAACTCGCGTTCACCAATCTACACGACTCCACATCATCTTGCACTTTTGTTAATCCGAGAATGAACAGAAAAGGAAGATCTCAGAAGatgtcTTTCGGAGAAGAAAACACACCTACTCCACTGTCAGCATGTTCCGAGGTGGAAGAGAAGTCATGGCGTGAAGCTGTCAAGAGCCTTCAGACCTATCAGGAAACTAGCATTTTTAAGAGCAGTGAGGTGCTGGTGAACACACAGTGTTTGCTGGAGCTCTTCCAGTTCTGCTGGCTTTGTCAGAAAGAGTGCTGTATTACCATTGAGGGCAACGAGAAGCTGTTTTCAGTCACGCAGGACTGCCAGAGTTGTGGCTACCACAGAGACTGGAGGAGTCACCCGCCTTCAGCCGAACCTGCACACACCTTTCATAAAGAGGAAGAACATATACTTGAGGATGAGGATGGTGAGGAGGTTGTGGTTCACATTGTGTCATCAGATAACGAGTGCAGTGAGCAGGTGTTTATTGAAAAGGATGGATCGTATTTATCTAGTGATGATGAAGAAGCAAGTTTGCAGGAAGaggaagtgaaaaagaaaagaaagaggacGTCTAAACGTAAACACAGTTCAGATGAGTGGGAGCCATGTTTAGATGAAGAGGCCACAGACTCTGATGTGTCCATGGATGAAGACCTGTTCACAGCTTTAAAGGAGGATGGTCAGGGTAAACTTGTGGTGTGGTGTACACAATGTGGGACCGAGGCCTCGCTCTCCTGTTCTGTCCATCGACACAAAAAAGCGTTCTGCTGTGCTCAGTGCAGTGCAGGTGACGACATTAAAACACATACTTTTGAAACACTACGTATTCGGTTTGATGACGTCGGCAGTTTTCAGAAACATGCTGAACAGGAGCACGGAGTCAAACCATTCTATAGACTGTGTCAGGATTGTGGCAAGTTTGTTATAGCAGATCCTGAATCCCGAGGTTTAAAAGAACATAAATGTGAACACAAGTCCAAATTTATTATCTGTCCAGAATGTGGGAAAAGATTCCTCACCAAGGTCGGACTAAAGTCGCACTACACTCAGCTCCATTCGGATTATGATCACCCGTGTAAATACTGTCTGAAGGTCTTCAAAACCAGGTCAATAAAACTGGAACATGAGCAGACTCATCCTAAAGAAAAACAACCATACAGCTGTCCAGATTGTCCAGAGAAGTTTAGCAACATTCACAAACGCAATAACCATGTCATATCTCACCGAGGTCcacataaatatgtgtgtgatgtatgtgagAAAGGCTTTAAGGACATCGTCAGGTTAAAAAGGCATGAACTCATCCACTCTGGAGAACAGCCTTTCAAATGtcaagtgtgtgaatgttccTTTAACCAAAAGGAAAACCTCACTTCCCACATGCGCGTCCACACTGGAGAGAAACCTTTCATGTGTGAGCAATGCGGAGAGTGTTTTAACCACAGCGTCAGTCTGAAGAACCACAAGCAACGACACCATGACTCGAGTTTGACTCATGATGAAGTAGTGATGCAGTGATTTATAAAAACACTTGATGTACTGAATGCAGAGGTATTAAAACTGCACTGTGGTTGCCTAGATTGAGGTGTTCCCAGTGGAACAGGGGATGCAGCCACAATTTAGACTTTGAAGGATTGCTGAGAAACATTTTGAAGGAGTCAGTTAATACTGATCAGACTGATAATAGAAATATGGCTGATTTCTTCTTTGTTTGATATTCTCACACTGCCTTTTCACAGATCTTGGAACAGTAGCtccattcattatttttatgacCATCATAAGCTATACACATCAGATTCATTTTTTCCTATTAAGAAATGGTGATACGTACATTCCAACACTTACAGTGTAAGTTATCCTCGATGTAATTCCTCAAgcagttttaaatgtattacCAAAAAGCTATTTAA
>XM_034304064.1
ctcgctttttgtgcacaggggcattgtcatgctggaacagGACCAAGATTGCCACCTGGAAGTTGGGCCACGTCCATCGCTACCAGTGCAGTCTGAGGTTGTTTCATTTCCTCAGCCTAATCACAAACTCGCGTTCACCAATCTACACGACTCCACATCATCTTGCACTTTTGTTAATCCGAGAATGAACAGAAAAGGAAGATCTCAGAAGatgtcTTTCGGAGAAGAAAACACACCTACTCCACTGTCAGCATGTTCCGAGGTGGAAGAGAAGTCATGGCGTGAAGCTGTCAAGAGCCTTCAGACCTATCAGGAAACTAGCATTTTTAAGAGCAGTGAGGTGCTGGTGAACACACAGTGTTTGCTGGAGCTCTTCCAGTTCTGCTGGCTTTGTCAGAAAGAGTGCTGTATTACCATTGAGGGCAACGAGAAGCTGTTTTCAGTCACGCAGGACTGCCAGAGTTGTGGCTACCACAGAGACTGGAGGAGTCACCCGCCTTCAGCCGAACCTGCACACACCTTTCATAAAGAGGAAGAACATATACTTGAGGATGAGGATGGTGAGGAGGTTGTGGTTCACATTGTGTCATCAGATAACGAGTGCAGTGAGCAGGTGTTTATTGAAAAGGATGGATCGTATTTATCTAGTGATGATGAAGAAGCAAGTTTGCAGGAAGaggaagtgaaaaagaaaagaaagaggacGTCTAAACGTAAACACAGTTCAGATGAGTGGGAGCCATGTTTAGATGAAGAGGCCACAGACTCTGATGTGTCCATGGATGAAGACCTGTTCACAGCTTTAAAGGAGGATGGTCAGGGTAAACTTGTGGTGTGGTGTACACAATGTGGGACCGAGGCCTCGCTCTCCTGTTCTGTCCATCGACACAAAAAAGCGTTCTGCTGTGCTCAGTGCAGTGCAGGTGACGACATTAAAACACATACTTTTGAAACACTACGTATTCGGTTTGATGACGTCGGCAGTTTTCAGAAACATGCTGAACAGGAGCACGGAGTCAAACCATTCTATAGACTGTGTCAGGATTGTGGCAAGTTTGTTATAGCAGATCCTGAATCCCGAGGTTTAAAAGAACATAAATGTGAACACAAGTCCAAATTTATTATCTGTCCAGAATGTGGGAAAAGATTCCTCACCAAGGTCGGACTAAAGTCGCACTACACTCAGCTCCATTCGGATTATGATCACCCGTGTAAATACTGTCTGAAGGTCTTCAAAACCAGGTCAATAAAACTGGAACATGAGCAGACTCATCCTAAAGAAAAACAACCATACAGCTGTCCAGATTGTCCAGAGAAGTTTAGCAACATTCACAAACGCAATAACCATGTCATATCTCACCGAGGTCcacataaatatgtgtgtgatgtatgtgagAAAGGCTTTAAGGACATCGTCAGGTTAAAAAGGCATGAACTCATCCACTCTGGAGAACAGCCTTTCAAATGtcaagtgtgtgaatgttccTTTAACCAAAAGGAAAACCTCACTTCCCACATGCGCGTCCACACTGGAGAGAAACCTTTCATGTGTGAGCAATGCGGAGAGTGTTTTAACCACAGCGTCAGTCTGAAGAACCACAAGCAACGACACCATGACTCGAGTTTGACTCATGATGAAGTAGTGATGCAGTGATTTATAAAAACACTTGATGTACTGAATGCAGAGGTATTAAAACTGCACTGTGGTTGCCTAGATTGAGGTGTTCCCAGTGGAACAGGGGATGCAGCCACAATTTAGACTTTGAAGGATTGCTGAGAAACATTTTGAAGGAGTCAGTTAATACTGATCAGACTGATAATAGAAATATGGCTGATTTCTTCTTTGTTTGATATTCTCACACTGCCTTTTCACAGATCTTGGAACAGTAGCtccattcattatttttatgacCATCATAAGCTATACACATCAGATTCATTTTTTCCTATTAAGAAATGGTGATACGTACATTCCAACACTTACAGTGTAAGTTATCCTCGATGTAATTCCTCAAgcagttttaaatgtattacCAAAAAGCTATTTAA

Function

NR:

description
PREDICTED: zinc finger protein 790-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304062.1 True 4092 mRNA 0.41 6 4974262 4982283
XM_034304063.1 False 2171 mRNA 0.44 6 4974262 4982521
XM_034304064.1 False 2049 mRNA 0.43 6 4974262 4979376

Neighbor

gene id symbol gene type direction distance location
LOC113547302 LOC108268221 coding downstream 1170 4960991 ~ 4973092 (-)
c8a c8a coding downstream 96033 4866481 ~ 4878229 (-)
trnar-ucg_1 NA coding downstream 164398 4809792 ~ 4809864 (-)
nom1 nom1 coding downstream 204391 4758649 ~ 4769871 (-)
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding downstream 245140 4678739 ~ 4729122 (-)
LOC113547304 LOC108268219 coding upstream 10068 4992589 ~ 5017807 (-)
LOC113547303 LOC108268222 coding upstream 30827 5013348 ~ 5017849 (-)
LOC117597187 LOC108261662 coding upstream 37586 5020107 ~ 5025400 (-)
LOC113547224 NA coding upstream 117894 5100415 ~ 5104126 (-)
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding upstream 147176 5129697 ~ 5150222 (-)
G59598 NA non-coding downstream 16341 4957717 ~ 4957921 (-)
G59559 NA non-coding downstream 59811 4870160 ~ 4914451 (-)
G59416 NA non-coding downstream 216497 4757431 ~ 4757765 (-)
G59398 NA non-coding downstream 295526 4677165 ~ 4678736 (-)
LOC113547239 NA non-coding downstream 382494 4590344 ~ 4591768 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 139615 5122136 ~ 5129619 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding upstream 197224 5179745 ~ 5212658 (-)
G59788 NA non-coding upstream 209639 5192160 ~ 5220686 (-)
LOC117597176 NA non-coding upstream 279963 5262484 ~ 5265109 (-)
G59823 NA non-coding upstream 339980 5322501 ~ 5329901 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 29241 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 326382 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 402435 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 717978 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 764156 4171199 ~ 4210106 (-)
LOC113547297 NA other upstream 100287 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 496021 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 917728 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1898861 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3470089 8452610 ~ 8551855 (-)

Expression


Co-expression Network