LOC113540619


Basic Information

Item Value
gene id LOC113540619
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24021065 ~ 24024165 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304069.1
TGGTACAAAGGGGTTAACATGATTAACAtggagttaacatggtcaatatcacaaatctGCTTACATgtaaatagtgacctagaaattgtaGAGATTAAAAGCGatctgcagacacacacagcacagtcttGCTGACAACATGGATGGTACACTAAAGGTTTTGCTGCTGGCACCCCTGATTCTGTTGGTTTCTGGCCAATCTTTTGAAAACTACAGAGACCTGCCTGACAAATATCAAAAACCTGTTAACAAAGCACTAGAAAAGGCAAACCATATCTTTGGAAAGACTCATCATGTTGCCTTCCATTCACTCGGACACCCTCGGAGGACTATGGAGAGCAACTTGAATGTAAATGTCCTTCTGATCATCACAACATGCAAGAAGGATTCCAAGAACACATATGAGCACAGAGATGAATGTGttacacaaaaacaacacacgCCGATGATTGACTGCGTTGTTTGTAAGACAACTGATGATCAGGAACTGGTTGACTGTGCCAGAAAGAGAGACGTCACTAGTGGAAGACGCAAAATGATTCGAGAAAAATGTAGGAATTATGCTCATGGATCAGCACACATTTTGAGGTCAGTGAGGGAGTGAAtgtgagctcaaagtgcagactttatGCTGTAATTTGAGAGTATtgacatccaaatcaggtgaacaatGTAGGATTAACAGTACATATTATATCTGCGcctccccccctttttttttttttttgaaaaggtgTTTTACCACCATGATTAAGCAGATtagtaaataaatcacattaaaaaagaGTGTTTTCTGTCACACTTTCAGGTTTTCTGACTAAGTCTGTTTTGCTATGGCGCATAACTATctaacaacttgatcaaagcatgacattaaCACCTATTTAGCAAAGTTTTAGACATATTTACGCATAATAGACCATTTTTCCCACCACAAAACGGGCCCCTTACCCAGcgtgatctttgcaggcagatgcCAAGACAAGGCTAAAAAGGTGAAGTAAAAAATTTCATGATGTTTTGGTGTATATGGTTTGagacttttccttttttttttttttggccacacTGACATCGGTCAGGTTTTCCCGCCACCACACAATCTTGTGTAGTAAacgtaaataaagtaaaaaggcTACATGTTACACCTCTATAACTGTATGTTGCTAAGAATAAATCTAAACTTGTGCATACTACTGTACATAGCAATGACTGCTCCTTAGTCTTACAAACTCAAATGTTGTGTcagtaattaatgttattttcagTCTTGCTTGCTGGAATTTAGTAGTAACAtaaaattatcattatttatgaCTTATCTTGTATAGCCACATGTAACTGATGTAATGTGTTTGCTGTTGTCTAGTACATAATAAAATGGTAGGTCAGTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304069.1 True 1396 mRNA 0.38 4 24021065 24024165

Neighbor

gene id symbol gene type direction distance location
LOC113540051 NA coding upstream 4322 24013856 ~ 24016743 (+)
mycb LOC108268289 coding upstream 370432 23648271 ~ 23650633 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding upstream 379596 23614440 ~ 23641469 (+)
otulinb LOC108268091 coding upstream 412864 23594961 ~ 23608201 (+)
stard3nl stard3nl,LOC107713985 coding upstream 619335 23392658 ~ 23401730 (+)
zgc:136930 LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002 coding downstream 97388 24121553 ~ 24127236 (+)
ccr9a LOC108267400 coding downstream 110511 24134676 ~ 24136808 (+)
LOC113540392 NA coding downstream 120917 24145082 ~ 24148968 (+)
si:dkey-154p10.3 LOC108267397,LOC107736657 coding downstream 137613 24161778 ~ 24170467 (+)
LOC113540614 NA coding downstream 146481 24170646 ~ 24174507 (+)
G69946 NA non-coding upstream 11205 24007703 ~ 24009860 (+)
G69878 abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809 non-coding upstream 77993 23940241 ~ 23943072 (+)
G69870 NA non-coding upstream 98369 23921800 ~ 23922696 (+)
G69736 NA non-coding upstream 163494 23855075 ~ 23857571 (+)
G69735 NA non-coding upstream 171551 23846645 ~ 23849514 (+)
G69966 NA non-coding downstream 59441 24083606 ~ 24084218 (+)
G69987 NA non-coding downstream 114470 24138635 ~ 24138888 (+)
G70129 ccdc24 non-coding downstream 542080 24566245 ~ 24566613 (+)
G70130 NA non-coding downstream 542835 24567000 ~ 24567318 (+)
G70134 NA non-coding downstream 546483 24570648 ~ 24570850 (+)
G69509 LOC108267411 other upstream 700722 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1368618 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2258764 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 2380908 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2697098 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 3941 24028106 ~ 24106223 (+)
G69971 NA other downstream 84630 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 834861 24859026 ~ 24871263 (+)
tnr tnr other downstream 1683662 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1872852 25897017 ~ 25902006 (+)

Expression


Co-expression Network