dvl3a (dvl3a,LOC108268006,LOC108430757,LOC107681796,LOC107671749,LOC107559372)


Basic Information

Item Value
gene id dvl3a
gene name dvl3a,LOC108268006,LOC108430757,LOC107681796,LOC107671749,LOC107559372
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27562149 ~ 27582022 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304070.1
ctctctctctctctactcaaTCAGAGCAATAGAAAAGCAGGAGCGAGCTTTAGTGCTggtgaggagaaagaaagaaagagagagagagagagagaaagggaggaaaAACCCAGCACGGGCTTGTTTAGTGTAGGTAGTGTGGTGTTAGTggtgttagtggtgtgtgtgagtgtgtgtgagtgtgtgtgttggtgagagAGTGCGGGAGGGAGATGAGGGCGCAGAGGAGCGCCGGGACGCGGGGGTAGAGCTGCTGTGCGCGTTGGAAGGTTTCCTGGCAACTCCGggggaagaaagaaagcaagcaagcaagagCGCGCGCGCGAGCAGGAAAagtcggggtgtgtgtgtgtgtgtgtttctcagcagGAGAAGGAGAAGCGAGCCCGAGTGTTGGAGGGGCACTGATGCCCACCGTGTCCTGTCTCTCCCCGGCTCTCTGCCATGGGGGAAACTAAAGTGATCTACCATCTGGACGAGCAGGAGACTCCGTACCTGGTGAAGCTTCCCGTCCCCGCCGCCGCGGTCACGCTGTCCGAGCTGAAGAATGCCCTCAAAAAACCAAACTACAAGTTCTTCTTCAAGTCCATGGACGACGACTTTGGgGTGGTCAAGGAGGAAATCACGGATGACAATGCCAAACTGCCCTGCTACAACGGCCGCGTGGTGTGCTGgCTGGTGTCGGCTGACGGCTCGCACTCGGATGGATGCTCGGTGGCAGAGAGTCAGTCGGAGCGGCCGCCGTCGGGGGAGAGATCTCAGGGCATCGGAGACTCCAGACCGCCGTCGTTTCATCCTAAAGCTGCAGGCAGCCGACACGGTGCAGACGATGAGACGGAGACGGATTCGGTGGTGTCGCACaggagggaaagagacagaccACGCAGGAAACAATCGCATGATCATTCAGGTGCGAGAATGAACGGTTACTCCCGAGTGGGCAGAGGGATGGAGCTCGGAGGCTACGACGTCTGTGACAGTCGCTCGTCCCTCATGAGCAGTGAGCTGGAGTCCAGCAGCTGCTTCGACTCGGATGACGACGGATCCACCAGCCGTTTCAGCAGCGTGACTGAACAAAGCGGCTCATCGCGCATGATGAGACGACACCGGCGCCGGAGAAGGAAACCCAAACCCCATCACATGGAGAGGTCGTCGTCTTTCAGCAGCATTACTGATTCCACCATGTCCCTGAATATCATCACAGTCACATTAAACATGGAAAAGTATAACTTCCTGGGCATCAGCATCGTGGGTCAGAGCAACGAGCGAGGTGACGGCGGCATCTACATCGGCTCCATCATGAAGGGCGGAGCTGTGGCAGCTGACGGACGGATCGAGCCGGGTGACATGCTGCTGCAGGTGAACGATATAAACTTTGAGAACATGTGCAACGACGATGCGGTGCGGGTGCTGAGGGACATCGTGCATAAACCCGGaccTGTCTCTCTGACGGTGGCCAAGTGCTGGGATCCAAACCCTAACAACTGTTTCACTCCCAGGAGTGAGCCCATTCGTCCGATCGACCCTGCAGCCTGGGTGTCTCACACGGCGGCCATGACGGGGATCTACCCTCCCTACGGCATGAGCCCCTCCATGAGCACGGTGACCTCCACCAGCTCCTCCATCTCCAGCTCCATCCCCGAGACCGAGCGGTTTGATGACTACCACCTGTCAGTCCATAGCGACATGGCAACCGTTGCCAAGGCGATGGCCTGTCCTGACTCAGGGTTGGAGGTTCGAGACAGGATGTGGCTGAAGATCACTATAGCCAATGCCTTCATAGgttCAGATGTGGTTGACTGGCTCTTCCATCACGTTGAGGGTTTTGCCGACAGAAGAGAAGCTCGGAAATACGCCAGTAACCTGCTGAAGGCCGGCTTCATCCGCCACACCGTCAACAAGATCACCTTTTCCGAGCAGTGCTACTACGTGTTCGGGGATTTATCTGGCAATATGGCGCACTTGTCCCTGCAGGAGCACGACGGTTCGAGCGGAGCGTCTGATCAGGACACACTCGCTCCCCTGCTCCACCCCGCCGAGGCTCCGTGGCCCAGTTTCCCGTATCAGTACCCGCCCTCGCTGCACGACGCACCTCACCATCACGCTGAGCCGGGCGGCGGGAGCGCCGGGAGTCATCACAGCGAGGGAAGCAGCGGTTCGAACTGCAGCTGGAGCAGAACGGATGGAAAGACGGCAGCGGCGGGGATAAACGACGTAACCGACACCCTGGAGTTTGACTTGCGTAGGGAGCGAGCACCGAGTGAGGGCAGCATCCGCAGCTCacgctctcactctcactctcactcctaCAGCGGCGTGTCTGGGGCACGTCATCTCGCCCACGTGCCCTCTGAACTCTCGGGCTCACGCCGCTCCTGCCTCACCGCCAACGGAGAGCTGTTCGTTGACATCATGTGACCACGACTGGATTGTGAACTACATTAAGaccatgttttctttctttcttttttttttttttattttaaaataaagaattgcatttaaaatatcagAATAGTACAAACTGTAACTCATAGCCCTGAAACATGGAAACtaggatcatttttttttttttttaaattaacattaggCTAAAAATGAATGGAAATAACAGTAGAATACAAAGCCCTTTTTCcccccgttttttttttttttttttgtatgtatagGTAATAGGCACATGCCGATAATCTCTCGTACAATATATCACAATGCTGAACTTTCTAAAATTGTCACTCTTTGTGTCTTATACGAGTGCCTAAATATTCAGGGTTTCTAGGtatcttttgtgtgtttgagaaattTCAGTCCACATGAGCGGTAATATTTTAGCAATAcagagtagtttttttttt

Function

symbol description
dvl3a Predicted to enable frizzled binding activity. Acts upstream of or within canonical Wnt signaling pathway; convergent extension involved in axis elongation; and post-anal tail morphogenesis. Located in cell cortex and spindle. Is expressed in liver. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 3. Orthologous to human DVL3 (dishevelled segment polarity protein 3).

NR:

description
PREDICTED: segment polarity protein dishevelled homolog DVL-3-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0003148 outflow tract septum morphogenesis biological_process
GO:0090103 cochlea morphogenesis biological_process
GO:0023051 regulation of signaling biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0090179 planar cell polarity pathway involved in neural tube closure biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005819 spindle cellular_component
GO:0005938 cell cortex cellular_component
GO:0005109 frizzled binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304070.1 True 2855 mRNA 0.54 15 27562149 27582022

Neighbor

gene id symbol gene type direction distance location
ap2m1a ap2m1,LOC108267679,LOC108430755 coding upstream 16020 27534676 ~ 27546129 (+)
si:ch211-252f13.5 LOC108267682 coding upstream 44945 27509850 ~ 27517204 (+)
abi1b abi1b,LOC108267643,LOC107671751,LOC107559371,LOC108430754,LOC107681778 coding upstream 53950 27495848 ~ 27508199 (+)
trnat-ugu_5 NA coding upstream 72824 27489253 ~ 27489325 (+)
zgc:55943 c7h1orf21,zgc:55943,LOC108430752,LOC103042176,LOC107709356,LOC107671715,LOC107559369,LOC107593773 coding upstream 84476 27468048 ~ 27477673 (+)
trnat-ugu_6 NA coding downstream 38583 27620605 ~ 27620677 (+)
trnat-ugu_8 NA coding downstream 39289 27621311 ~ 27621383 (+)
prtfdc1b prdc1,LOC108430708,LOC105891346,LOC105019119 coding downstream 46426 27628448 ~ 27639961 (+)
arhgap21b LOC108267702 coding downstream 66792 27648814 ~ 27698656 (+)
kmt2cb LOC108267465 coding downstream 275314 27857336 ~ 27939424 (+)
LOC113540592 NA non-coding upstream 2722 27556085 ~ 27559427 (+)
LOC113540696 NA non-coding upstream 4247 27557765 ~ 27557902 (+)
LOC113540695 NA non-coding upstream 5501 27556517 ~ 27556648 (+)
G72118 NA non-coding upstream 6443 27553127 ~ 27555706 (+)
LOC113540179 NA non-coding upstream 74438 27483820 ~ 27487711 (+)
G72236 NA non-coding downstream 429722 28011744 ~ 28012459 (+)
G72276 LOC108267477 non-coding downstream 532429 28114451 ~ 28122142 (+)
G72336 NA non-coding downstream 886926 28468948 ~ 28471765 (+)
G72378 NA non-coding downstream 992900 28574922 ~ 28578950 (+)
G72404 NA non-coding downstream 1037802 28619824 ~ 28637201 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 155751 27384807 ~ 27406398 (+)
gng7 NA other upstream 680679 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 1186323 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 1269365 26288290 ~ 26292784 (+)
G71385 NA other upstream 1332958 26228764 ~ 26229191 (+)
insig1 insig1 other downstream 720829 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 734382 28316404 ~ 28338173 (+)
gng5 NA other downstream 1176523 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1210825 28792847 ~ 28797159 (+)
G72873 NA other downstream 1292334 28874356 ~ 28912104 (+)

Expression


Co-expression Network