sec24d (sec24d,LOC103036498,LOC107732696)


Basic Information

Item Value
gene id sec24d
gene name sec24d,LOC103036498,LOC107732696
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18221624 ~ 18243797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304071.1
TCCCACCactgtgcgcatgcgcagaagcAGCAAAATACCCGAGGCCGGTGCCGGGAGTTTGACGTGGCACTCTCGTTAGGCTCGTCTGCGTTCTCAGTAGGCAGCACGCTCGGCGTCATCTCTACCTTACAGGATGAGCCAGCAGGGTTATGTTGCTACGCCTCCGTACTCGCAGGCCCAGGCGGGAATGGGGGGATACCCCACTGCATTCGGGGCTCCCCCTCCACAATCCCATTATGGGCACTATGGAGCTCCACCACAGTCCTTTCCTCCACAACCAACAGGTATGCTCAAACCAGCTGCCTCCTCTCCTTCTGGGATGCCTCCACCACCTGTGTCTAGCCAATATGGATCTCCTATTCAACAAAATGGCGCACACCCACAGAAgtTCCCTCCCACTCCAGCAGTCTCTGCACCTGCCATGTCTCCCTATGGACAACCCCCTCAAAGACCATACCACAGCATGGCTCCGGCCATGCCTCCAACCCAACAAATAGCCAATCAGATGAGTGCTATGAACATTGATGGATATGCCCAAAGCCCTGTGCAATCTCCTCAGTCTTTAGCAGCACCACAGCCGTTCCAAATGTCTCCACCACCAACAATGGGTCATCCACCCATGTCTCCTCCAGGCACTCAGCCTCTCTCGATGGGTACATGTCCACCAATGGCAGCTAGTCCACCCATGAGTGCAGCAGGGCCTCCGCCAATGGGATTGTCTAATTCACGGCCTCACCCTCCTCCACTGAGTGGAGCTGGATTCCAACAGCCACCAGCACCTCAGGGATTTCCTCCTCAGCAGCCAGGATTATATGGAGGACAGATGCCCGGGTCACCGATGACAGGGCCTCAGCCAGGCGCTTTTCCAGGAGGTTTCCCTGGAGGAGCTGCCAACATGGCTGGACCCCCTCAGAAGAAACTCGATCCAGACTCCATACCTAGCACAATACAAGTGATTGAAAGTGACCAGGCTAAGAGAGGTGGTCAGGTCTACACCACGAATATGAGGGGTCAAGTGCCGCCCCTAGTCACGACCAACTTCACTGTTCAGGATCAAGGAAATGCTAGCCCAAGGTTCATTCGTTGCACTACCTACTCATTTCCCTGTACCTCTGACCTTGCCAAGCAGTGGCAAGTGCCTCTGGCGGCCGTCATCAAACCTTTTGCCACAGTGCCCAAAAATGAGACTCCTCTATACATAGTAAATCATGGTGAGACAGGACCCATACAGTGTAACCGCTGTAAGGCCTACATGTGCCCCTTTATGCTCTTCATTGACGGTGGAAGGCGCTTCCAGTGTGGCTTCTGCAATTGTGTTAACGAGGTTCCTGTCCAGTATTTCCAGCACCTGGACCATATGGGCCGAAGAGTGGATGTATATGAAAGACCAGAGCTGTCCCTGGGTTCTTATGAGTTTGCTGCTACGCTGGATTACTGCAGAAACAATAAGCCTCCCAATCCTCCTGCTTATATCTTCATGATCGATGTCTCCTACAACAACATAAAGAGTGGACTTGTCAAACTTATATGTGAGGAACTGAAGTCACTGCTGGAACGACTTCCAAAAGAGGAGGGAGCTGAGAGCTCAGCCATCAGAGTGGGCTTTGTCACCTACAACAAGATCCTGCACTTCTACAATGTGAAGAGTGCACTAGCTCAGCCCCAGATGATGGTGGTCTCTGATGTGGCAGATATGTTTGTGCCCCTTCTGGATGGATTCCTGGTCAGCTTTCAGGAATCACGAGCTGTCATCAACAATCTGTTGAGCCAGATCCCTGACATGTATGCTGACACAAACGAGAGTGAAACTGTTTTTGCTCCAGTTATTCAAGCTGGAGTGGAAGCACTGAAGGCTGCTGAATGCAGTGGAAAGCTCTTCGTCTTCCACTCCTCCCTCCCAACTGCAGAGGCACCTGGGAAGCTGAAGAACAGAGATGACAGGAAGCTGGtgaacacagagaaagaaaagACTCTGTTTCAGTCACAGCGCGGTGTGTATGAGCAGCTGACTAAAGAGTGTGTGAGCCAGGGATGCTGCGTGGACCTCTTCTTGTTCCCTAACCAGTATGTGGACTTGGCCACTATGGGTGacattcccacacacactggCGGCTCAGTTTACAAATATAGCAACTTCCAGGTTCAGACAGATGGTCAGCATTTCCTCAGTGATCTGAGACGAGACGTGGAGAAGTCCATTGGATTTGATGCCATAATGCGTGTTCGAACCAACACAGGTTTCAGGGCCACAGACTTCTTTGGTGCCATCTATATGAACACAACTACAGATGTGGAGATGGCTGCAGTGGACTGTGACAAAGCAGTTACAGTGGAGTTTAAGCATGATGACACACTCAGTGAGGAGGCTGGGGCACTTATACAGTGTGCTGTGCTGTACACCTCCGTCAGTGGACAGAGGCGACTGCGCGTTCACAACCTCAGTCTGAACTGCAGCTCTCAGCTATCTGAGCTCTACAAGAGCTGTGAGACTGATGCACTCATCAACTTCTTTGCCAAGTCAGCATACCATGCTATACTAAGCCAGCCGGTGCGGACGGTGAGGGAGATCTTGGTGAGGCAGACAGCTCATATGCTGGCGTGCTATAGGAAGAACTGTGCTACACCTTCTGCTGCAAGTCAGCTGATCCTGCCGGATGCTATGAAAGTGTTCCCGGTGTACATGAACAGCCTGATGAAGACTCCAGTTCTGGTGGGCAGCACTGAACTCTCTACAGATGACAGGGCTTTCCATAGACTCAGCATCATGTCCATGGGAGTGGAGGAGAGCCAGGTCTTGCTATACCCACAGCTCATTCCAGTGcaCTCCATGGACGTGGCGTGTGATTCGATTCCGGCAGCAGTGCGCTGCTCTGAGGAGCGTTTGAGTGATACAGGTGTGTTTTTGCTGGAGAATGGCCAGTCTATGTTCCTGTGGCTGGGCCAGGCCTGCCCTCCTGACCTCATCCAGAGCCTCTTCAATGTGCCCTCCATGGCCCATCTCAGTTCAGACACGACTACATTGCCTGAACTAGATAACGCTCACTCTAGGAAGCTTCAGTCCATCATTTGTGCCATCTCCCAGCAGCGGTGCAAGTCCATGAAGATGGTGATTGTGAAGCAGAAAGACAGATCAGAGATGCTGTTCCGCCAGCTCCTAGTGGAGGATAAAGGCCTGTATGGAGGAACTTCGTACTTGGAATTCTTGTGCTCGGTTCACCGTGAGATTAGGCAGCTTCTGTcctaacatacacacagactcataTACAGTCACCAGCCCCTTTATTAGAATTTGTACACCTGCTCAATCATggaattatccagtcagccaatcatgtgtcagcagcgcaatgcagaaaatcataaaataatatcaagactggtttgagctgacaggaaggctacagtaattcaGGTAACTACTTTTAAAACCGTAGTGAGCAGTAAAgtatctcagaacacacaacacagcgaACCAtgaggaggatgggctacaactgCAGAAGTGCAGAACTGCAGAACATCGGGTTCCATgcctgtcaaccaagaacaggaatctgaggctacagtgagcacagtctcAATGAGACTGGAcaattgaagactggaaaaacttTGCCTAGACTGATTAATGTCAATTTCTGCTGAGATATGCAGACGGTACGGTCAGAATTGGGCATCAAGAGCATGAATCCATAGACCTAGCTTGCGTTGTGTCAACAGTTCGGgcgggtggtggtggtgtaatagTGTGGGGAATATTTTATTGGCACATATTGGGCCCCTTTAATACCAATCAAACATCagttgaatgccacagcctatctgcTATTGTTGCtcaccatgtgcatccctttataGCCAGAATTTACCTATCTTATAATGGCtaattccagcatgataatgggccatgtcacaaagcacaagtcatctcaaactggtgacatgaacatgaacatgagttcagtgtacttcaatgGCTTCCCTAGTCACTGGACCTGAATCTGATGGAGCATCTTCAGGATATGGTGAAACAAGAGATTCACAGCCTGAATGTTCAGCAGAAAATTGTTATGCAATCATGTcgacatggaccagaatctcaaaggaatgtttccaacaacTGGAAACCATACTAAAAAGAATACATAATGTTGAAAGAGCAGGGGATTTAGTAAGGattagtatggtgttcctaataaagtggttggtgagtgtatagACAGAGTGTGTGCAAGGCAGCACACATGATGAACTTCTTACTATTTCCAGAGCTGCCTTTGAATGACTGTACAACTCCATCAGGACTTCACAAGTGTTCTTATTTTGTCAGTTTCACTCAAAATTCTAGTTTGGGATTAAGCTTGGCTTGCTTTTATGTAATGGTATGTATTAATGTCTCCTAATAtatacaatctttttttttctttagataaCATAAAAAAAGGAGAGGATTCGCAAATTCCCCATTATTTgccaaattaaaaattacaataaaaaaattgttttattaaaatggtaCCAAAGAATGAGAAAAGTTTTAGTCTGTGTTAAAAAAACACCCTCATTAAATCAGGCCTTTTCTGCATATACAGGAAATGCTGTCTATTAAATTCATAGATTAAATCATTGGATACCATTAGAAATATTAGAAGCATTAGAATGGACTAACTGAAATTAATTAAACTTCAattatattaaatgatatttattcaCAAAAACTATGAGAAATTGTTTCACGCATAACCCTTTGTATTCCTGATTCTGTGGCATTTTTTGTCTTGGTCATACATGCTGTAAATttgtacacagtgaaacatttattttgagtGTTTAGCAGTTTACTGTATAATCCAAGAAAcaaatcatatacagtataaggcATCTTTTGTACATGAGCTGTTATCTTTCCATGCTCACAGAAATTGCTTCATGGGCATCAAAGTAAATTGAAAAAGTTTTTCATATTCAGTATaccttaatattttttattggtatattacatcatatattttattacttctgtgatgtatttgaaaaataatagcTTACATGTAAACATACCTCAGGTAACGCATGTGGAGAGGTACATGTTTACAACTGCTTACAGTAGCTTACAATGTGGAAGTAGatgaactttttaaatttttgaatGTTGGGCCCATTGGTTGAGATAAGGATGCTGTGCCATATACATTCCAGTTTATAAACATCCAGTACAAAactttttgattaaaaatagtCTTCATTGAA

Function

symbol description
sec24d Predicted to enable SNARE binding activity and zinc ion binding activity. Acts upstream of or within cartilage morphogenesis; embryonic viscerocranium morphogenesis; and extracellular matrix constituent secretion. Predicted to be located in cytoplasmic vesicle; cytosol; and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in several structures, including immature eye; myotome; nervous system; notochord; and pharyngeal arch cartilage. Human ortholog(s) of this gene implicated in Cole-Carpenter syndrome. Orthologous to human SEC24D (SEC24 homolog D, COPII coat complex component).

NR:

description
protein transport protein Sec24D-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0070278 extracellular matrix constituent secretion biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14007 SEC24; protein transport protein SEC24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304071.1 True 5250 mRNA 0.46 24 18221624 18243797

Neighbor

gene id symbol gene type direction distance location
rap1gds1 rap1gds1,LOC107552992 coding upstream 139194 18049289 ~ 18082430 (+)
spata6l spata6l coding upstream 193573 18020211 ~ 18028051 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding upstream 202545 18015129 ~ 18019079 (+)
elp5 elp5 coding upstream 223408 17992640 ~ 17998216 (+)
LOC113540162 LOC108268287 coding upstream 253313 17966324 ~ 17968311 (+)
gba3 LOC108267130,LOC108437095 coding downstream 182561 18426358 ~ 18430359 (+)
sod3a NA coding downstream 605368 18849165 ~ 18851580 (+)
ppp1r15a NA coding downstream 707250 18951047 ~ 18954000 (+)
LOC113540597 col25a1,LOC102793499 coding downstream 926902 19170699 ~ 19327377 (+)
etnppl etnppl coding downstream 1084234 19328031 ~ 19338707 (+)
G66452 NA non-coding upstream 43982 18177234 ~ 18177642 (+)
G66426 NA non-coding upstream 109709 18111685 ~ 18111915 (+)
G66263 NA non-coding upstream 125041 18091588 ~ 18096583 (+)
G66237 NA non-coding upstream 229377 17990435 ~ 17992247 (+)
G66186 NA non-coding upstream 246265 17973998 ~ 17975359 (+)
G66637 NA non-coding downstream 138159 18381956 ~ 18382162 (+)
G66654 NA non-coding downstream 186765 18430562 ~ 18431136 (+)
G66670 NA non-coding downstream 247575 18491372 ~ 18491581 (+)
G66754 NA non-coding downstream 425245 18669042 ~ 18669250 (+)
G66855 NA non-coding downstream 584382 18828179 ~ 18833827 (+)
G66492 LOC108267609,LOC108437090 other upstream 13060 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 77993 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 210662 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 601545 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 820236 17335497 ~ 17401388 (+)
G66864 NA other downstream 612659 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 1746887 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 1903998 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 2776461 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 3070421 21314218 ~ 21323967 (+)

Expression


Co-expression Network