si:cabz01074946.1


Basic Information

Item Value
gene id si:cabz01074946.1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8530188 ~ 8541291 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304095.1
ttaaagcattttttaaagcataaaaaaaaaaaaagtaatgtttcgAAGGACAGAAATTCTAATGATCTGTATGGTGCTGTGTTTCCAAGCATCCAAATGTGAAGATGCGCTGAAAGTAATTGGTTACATTGGTGAACCGGTTGTCTTAACATCAGGGGTTGATGAGTCATGGACGCTGAGCAGAATTCAGTGGTCTATCTATGAGAACTCCACATTTATTGCAACATTTCAAGGGGGAAAACCAGATGTCAACCGGTGGGCACCATTCACCAGCCGACTTAATCTTGACACAGTCTCAGGcgatttaacaataaaaaatataagagCCAGTGACTCTATGAAATACACTGTGCGTCTGGAAGGGCAAGAAGCCAGTCAACGTAAAACCAGCTCAATTTATCTGTCTGTTCGAGAAAAACTCCTCAAGCCAAACATCACTCTTTTGCACAGTTTTCTGGATGCAGGGCAATGTGTAATCTCACTTAAGTGCTCAACACTGAGCAGTAACATTTCTCTCATTTGGAAACCTGAGCATGGCTTCAGTGAGCGTTTCTGTAATGACAATCCTAATGTCACCAGAGAGTCTGTTATGTGGACATCTTTAAGGACCAACAGAGACGTAATCTTCTCCTGCATTGCTACTGATGGGAATCGCAAAGAGTTGAGACAGTGGAATGGGAAATGTCCAGTGCCAGAAGAGAAAAGCTGTAAGGAGGTTGGCATGTTTTTTCTGGGCTTTTTCCTTTGTCTGGTAAttgctgtcattatattctGGAAAATTGAAGGTTTTTCTTCCTGTAAGAAGTTCTCTGAAGATGCCTCCTGATGTCTCTGGAAGTTTTCCCAGTATGCATATATGTGGGTGTAGTTCTGTGCGTGTGTTTGAGGAAAGTATATTCACACATtgcaaaatataaaaccatGTGTGTTTCCGATTAAATTGACCGAACATAAACTTTGTTTATTGATTGTC
>XM_034304096.1
ttaaagcattttttaaagcataaaaaaaaaaaaagtaatgtttcgAAGGACAGAAATTCTAATGATCTGTATGGTGCTGTGTTTCCAAGCATCCAAATGTGAAGATGCGCTGAAAGTAATTGGTTACATTGGTGAACCGGTTGTCTTAACATCAGGGGTTGATGAGTCATGGACGCTGAGCAGAATTCAGTGGTCTATCTATGAGAACTCCACATTTATTGCAACATTTCAAGGGGGAAAACCAGATGTCAACCGGTGGGCACCATTCACCAGCCGACTTAATCTTGACACAGTCTCAGGcgatttaacaataaaaaatataagagCCAGTGACTCTATGAAATACACTGTGCGTCTGGAAGGGCAAGAAGCCAGTCAACGTAAAACCAGCTCAATTTATCTGTCTGTTCGAGAAAAACTCCTCAAGCCAAACATCACTCTTTTGCACAGTTTTCTGGATGCAGGGCAATGTGTAATCTCACTTAAGTGCTCAACACTGAGCAGTAACATTTCTCTCATTTGGAAACCTGAGCATGGCTTCAGTGAGCGTTTCTGTAATGACAATCCTAATGTCACCAGAGAGTCTGTTATGTGGACATCTTTAAGGACCAACAGAGACGTAATCTTCTCCTGCATTGCTACTGATGGGAATCGCAAAGAGTTGAGACAGTGGAATGGGAAATGTCCAGGTTTTTCTTCCTGTAAGAAGTTCTCTGAAGATGCCTCCTGATGTCTCTGGAAGTTTTCCCAGTATGCATATATGTGGGTGTAGTTCTGTGCGTGTGTTTGAGGAAAGTATATTCACACATtgcaaaatataaaaccatGTGTGTTTCCGATTAAATTGACCGAACATAAACTTTGTTTATTGATTGTC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304095.1 True 973 mRNA 0.40 5 8530188 8541291
XM_034304096.1 False 877 mRNA 0.40 4 8530188 8541291

Neighbor

gene id symbol gene type direction distance location
vangl2 vangl2,LOC108268029,LOC107686095,LOC107707319,LOC106609014 coding upstream 5900 8509133 ~ 8524288 (+)
arhgef11 arhgef11 coding upstream 25535 8465305 ~ 8504653 (+)
LOC113526595 LOC108267854,LOC108436868 coding upstream 173658 8231180 ~ 8356530 (+)
znf830 NA coding upstream 426171 8102405 ~ 8104017 (+)
LOC113526329 LOC108267642,LOC108436873 coding upstream 429123 8085146 ~ 8101065 (+)
LOC117597150 LOC107663573 coding downstream 293532 8834823 ~ 8836571 (+)
LOC117597148 LOC107663573 coding downstream 446438 8987729 ~ 8991452 (+)
LOC113540089 NA coding downstream 788044 9329335 ~ 9332782 (+)
pnp5a LOC108267282,LOC103368940,LOC107692836,LOC108440276,LOC107747996,LOC107728028 coding downstream 887434 9428725 ~ 9434604 (+)
sf3b2 sf3b2,LOC107692835 coding downstream 1086457 9627748 ~ 9641910 (+)
G61175 NA non-coding upstream 203444 8291928 ~ 8326744 (+)
G61176 NA non-coding upstream 234087 8295371 ~ 8296101 (+)
G61162 NA non-coding upstream 291706 8218094 ~ 8238482 (+)
G61098 NA non-coding upstream 411337 8117708 ~ 8118851 (+)
G61096 NA non-coding upstream 419745 8109478 ~ 8110443 (+)
G61350 LOC108267352,LOC108267722 non-coding downstream 202472 8743763 ~ 8824178 (+)
G61347 NA non-coding downstream 256181 8797472 ~ 8800324 (+)
LOC117597155 NA non-coding downstream 263023 8804314 ~ 8806081 (+)
LOC117597153 NA non-coding downstream 291922 8833213 ~ 8834025 (+)
LOC113524706 NA non-coding downstream 369369 8910660 ~ 8915841 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other upstream 467349 8056056 ~ 8062839 (+)
LOC113547228 NA other upstream 1825842 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 1933587 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 2386386 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 2933963 5579796 ~ 5596225 (+)
LOC117597156 NA other downstream 154061 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 183254 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 353179 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 1217169 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 1266030 9807321 ~ 9832280 (+)

Expression


Co-expression Network