LOC113547279 (tns3,LOC101063620)


Basic Information

Item Value
gene id LOC113547279
gene name tns3,LOC101063620
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5506701 ~ 5554666 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304112.1
ATGGAGGAAGGCTATGAACTTGACCTGACCTATGTGACAGAGCGCATCATCGCCGTGTCCTTCCCGCAGGCCTGCTCCGAGGAGACCTATCTGCACAATCTGAAGGATGTCACGCGCATGCTCAAGTCGAAACACGCTGATAACTATTTGGTGATCAACCTGTCAGAGAAGAAACATGACCTGACCAAGATGAACCCTAAGACTTTAGACACGGGCTGGCCGGATCTGCACGCTCCTCCTCTGGATAAGATCTGCACCATCTGTAAGGCCATGGAGAACTGGCTGAACAACGACCCGCTGCACGTGGTGGTCATCCACTGCAGGGGAGGTAAAGGCAGGATTGGAGTAATCATCTCTTCCTTTGTTCACTTCACGGACATCTCCGCCAGCGCAGATCAGGCACTGGATCGCTTTGCCATGAGGAAGTTCTACGACGATAAAGTCTCTGCTCTGATGACGCCCTCAcaaaaaagATATGTATGGATCCTGAACAGTCTGCTCAGTGGCTCCATGAAGATGAAcgcctctcctctcttcctgcACTGTATAATCCTACACGGGATTCCCAACTTCGACAACTCTGGAGTGTGTCGTCCGTTCATAAAGGTGTATCAggggatgcaggctgtctacgCCTCCGGAGTTTAtcaCATCGGACCAGGCCACAGACACAAGGTGTGCATAGCCCTGGAACCGGCGCAGCTACTGAAAGGAGACATAATGgtgaagTGTTTCCATAAAAGCAGTCCGTCTCAGCGAGATCTGGTCTTCAGACTGCAGTTCCACACCGGAGCCGTGCAGGGATACAGCCTGATGTTCGAGAAGGAAGACATGGAGCAAGCCAACAAAGATCCCAGATTTCCGGATTACGGCAAAGTGGAGCTGGTGTTCTCTGAAGGACCTGAGCGGAGCCAAGgAGCTGATCTCTGGCAGAACGGTGCTGATGTGTCGGTGGACTACAGCTCTACAGACTCGCTCACCAGATGGGACTCGTACCAGGACGTCTGCAATGGGGAAGCTCCTCCCTTGCAGCCCCCGATCGCAACCCTGGACAAATTCTCACCTAAACGAAGCCAGGGCAGCACAGTCATCCTTAGCAGATCCAACCGCACCACATCTGTCACCTCCAGCCCCGAGCATAGTGATCACGCTCTTTCAGCCAGCAGTGACTCCGGTCTCTCGAGTGCTTCCCTTTGGACTGAGCGCTGCCCTGTGTCTGGTAGTAAGTCTGCTGGTCCCAGTGAGCAGGAGAAGGCAGAGCTGAATCGCCTGCTGAGTGGATTTGGGCTCAATGAGCCTCGGACAGATGATGGAATGGAGCTGACCTCAGCCTCTCAGGGAGTCCTCCATCACCCAGTGCAGGTCCATATGAACGGCAACTCCCGGCCAAAAGAGCGAGAAACGGATATCCTGGATGACGAGGTCCTGATGTCGGGCCACGACCTGCGCAGTGTGGACAGTCTAGGGACTCTCTCTTCATCATACCACAAGAGCAGCCAAAACTCTCTGCTCTCTGATGGCTTCTGTAGCCCTGGCGTGATTGAGGATGTCCCACATCATGGCCCAGCAGCCATGGAAGAATATGAGCGAGCATACGCTGAGACACGGAGAAACTGCCTTGCCAAGAGAACTGTCTCTGTTCCTGTCACCGCCACTTCCAGCACAGCTTCCAGGGGGCAGCAATTCCGGCAGGGCAACTACTCCACTCAGACCTGGGTCCGCCAGCAGCAAATGGTAGCGGCCCCTCACTACTCCTACCTGCCTGAGGAAAGTGGAGTAGAGGAGAACTTCCATGGGGAGAAGCAAGAGATTTCACCCAAAATGATCATTAGTGATCAAAACCACACTGCTCTGACCCCAAAGGTATCGCCAAGCCAGGAGACGGAGAAAAATCATGACGAGGAGTTTAACTCGCTCACAGTGGACATCGACAACTCCATCGACCAGCTTAACCAGTTGATCCTGGATTTGGACCCTACATTTGTGCCCATCCCAACACGGACCAATTCGGTTAAAAGAAATGGAGGGTCCACGGCTATGACTTCTACTTGTAACAACAAGGGCTTGACACTCAGACTCAATGAGAACCACAGGAATCAGCAGACAGCTGTCCCACCTGCCGGAGAGAGTTTGCGCACTCTGAGTCGTCAGGGCAGTGAAGTGGCCGAACACGCGACAGTGTGTGTGCGGCCGGCGTGGGAAATGGAGCCGGAGTTTGGGGACagactgacatacacacacaatgtagcTCCACCacagCGAGCTCCTCTGTACAGAGCAGACAGTGTGGAGTACCGAAGTCCCAGTGCTGGACTGGACACAGGAAGTGACACGGTTCCTCCAACACCAGCCTTCCCCATCTCACCACCCACGCCTTATGTGAAGACCATGCCGGAGTTCACGCACTTCACCCAGACTCCATCTCCCAGCATGCCGATGTACGGAGCCTTTAGGACGGAGCACGATATGAAAGCTTTTGCAGATATTATGGGACATGATGAGAACAGAGTGAACGTGTCTCACAGAGCTTTCCCTCACTCCCCGCCCACTGGAGGAGTGATAACCCTTACAGACAGCTCGGTTCAGTCCTCCTGCCCAGAAGGGGCACTGCTCAATCGCCACACCTCCATCAACGCCCAACACTCTGGCCCAATGGGTTACAACCAGAACTCACCTCCATCCCACCATCCTCACCTACACCCTCACCCCGCCCCCAACACCCACAGCTCACCCCGGGGCAGTCAGAGGACCCGAGGGGTGCAGTACACACTGAACCGCAGCCCAGCACTCAGCTTCGACGACGAGCCTGATGGTCTGAGCTACCAGCCCCAGCAGCCCCCGCTTCCTGAAAAGATGCGCGCCGCGGACTGCGAGCGTTCGTTAGGTTCTGTGTCCCCGGCACCTAGCGGGTTCTCCAGTCCGCACAGTGGGAGCTCGCTCTCTATTCCCTTCCCTAACTCACTGCCCGAGCTGCAGGCCAGGAGCAGCAGTGTCAGCCCTCTACCAGATGTCCTGGTGAGCAAGCAGGTGACGGTAAAGTTCGTCCAGGACACTTCGAAATACTGGTACAAACCGGACATCGCAAGGGAACAGGCCATCGCAGTGCTGAAGGACAAAGAGCCCGGCTTCTTCATCGTACGCGACAGCCACTCGTTTAAAGGCGCCTATGGATTGGCTATGAAggtggccacgccccctccaTCCGTGGTGCAGCAGAGTAAGAAGGgtggcgATTTGTCCAATGAGCTCGTCCGTCATTTCCTGATTGAGTGTACACCTAAAGGAGTTCGACTGAAGGGCTGTCCCAATGAGCCTTACTTTGggaGTCTGACTGCACTGGTTTGTCAGCACTCTATCACACCGCTGGCTCTGCCGTGTAAACTCATCATTCCAGACAGAGATCCACTAGAGGACATTGTTGAAGCAGCACCACAGTCCATCACCAACTCTGCAGCCGAGCTTCTGAAACAGGGAGCAGCATGTAATGTGTGGTTCCTGGGCTCTGTGGAGATGGAGTCTCTGACGGGTTACCACGCCGTGCAGAAAGCCACCACGGACCTGCTGAACGCTGACCCTGCACCCTCCTCCACCGTAGTGCACTTCAAAGTGTCCTCGCAGGGCATCACGCTCACCGATAACCAGAGGAAGCTGTTCTTCAGGAGACACTACGCTGTCAACACTGTTATCTTCTGCGCTTTGGACCCTCAGGACAGGAAATGGAGACGGGATGGATACCCATCAGCTAAGATTTTTGGCTTCGTAGCCCGGAAGACGGGCAGCGGCATGGACAACGTGTGCCACCTATTTGCTGAACATGACCCCGAGCAGCCCGCCAGCGCCATCGTCAACTTCGTCTCCAAGGTCATGATCGGCTCGCAGAAGAACGCCTGATTTCAGCTCGACATGTTACCCAGGAAGGCACCAAATCACCCCATTCACCCCTATTCACCCCTATTCTCCCTCCCCTAATGGACCTGCTGTCCCCTAATGATGACATCACACTGTGTGTCACATGAACACAAACTCTAGAGCTATCATTAATGAGGAAGGACGCTTATCAGAGagctaaagagagaaaaagtgtgtAGGTTGGGACTGTGCTGCTActcagctttaaaataaaagtgtatgtTAAGTGTcatgtatattgtatatgtatgtaatggTATCTAAccaaattgtatttattgtatttttctttgcaGAATATTCAAGTTTTCAGGATATAAACCTCAGATTGCTTTTGTCTTCAGTGTGGGGAATTATTGTTGATGTTAAGTGTTCTCTAGCTTTTATTGGAATTTTACTACTGACCATCTATAGATGAACGGCGTATACACACTCGTAGCTGGGCCAGTTTATTTAgtttagctttattttttataaagaactatgtgtttttattataaagGGCTATATGGACTAAGTGACTAGTAGTTTTAACAAGaccaaaacctttttttttttttttaatacagctgATAGCTA

Function

symbol description
tns3 Predicted to enable phosphatase activity. Predicted to be involved in dephosphorylation and intracellular signal transduction. Predicted to act upstream of or within cell migration; lung alveolus development; and positive regulation of cell population proliferation. Located in cytosol and focal adhesion.

NR:

description
PREDICTED: tensin-3 isoform X1

GO: NA

KEGG:

id description
K18080 TNS; tensin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304112.1 True 4488 mRNA 0.52 26 5506701 5554666

Neighbor

gene id symbol gene type direction distance location
angptl1b LOC108268093,LOC108440936,LOC105891317 coding upstream 40582 5449482 ~ 5466119 (+)
LOC113547281 LOC108267848 coding upstream 72981 5431236 ~ 5433720 (+)
LOC113547286 prdx6,LOC108267850,LOC108414843 coding upstream 96486 5402284 ~ 5410215 (+)
LOC113547263 LOC108261082 coding upstream 200160 5286357 ~ 5306541 (+)
LOC113547265 LOC108268247,LOC108268075,LOC108267254,LOC108261847 coding upstream 253852 5240683 ~ 5252849 (+)
LOC113547280 phactr1,LOC108267725 coding downstream 228992 5783658 ~ 5824929 (+)
phlpp1 phlpp1,LOC105899321,LOC107563109,LOC101073770,LOC104947935 coding downstream 275140 5829806 ~ 5901415 (+)
LOC117597064 phlpp1,LOC105899321,LOC106925929,LOC101166990,LOC103479552,LOC102225687,LOC108239649 coding downstream 364977 5919643 ~ 5928583 (+)
dusp22b dusp22,LOC103368952,LOC100701332 coding downstream 437262 5991928 ~ 6009784 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding downstream 460254 6014920 ~ 6037232 (+)
G59745 NA non-coding upstream 14240 5492201 ~ 5492461 (+)
G59712 NA non-coding upstream 67980 5437844 ~ 5438721 (+)
G59725 NA non-coding upstream 77079 5429281 ~ 5429622 (+)
G59663 NA non-coding upstream 137245 5301882 ~ 5369456 (+)
LOC113547270 NA non-coding upstream 240687 5264016 ~ 5266014 (+)
G59707 NA non-coding downstream 284 5554950 ~ 5555698 (+)
G59908 NA non-coding downstream 1925 5556591 ~ 5556859 (+)
G59990 NA non-coding downstream 170780 5725446 ~ 5725668 (+)
G59993 NA non-coding downstream 171936 5726602 ~ 5727441 (+)
G60029 NA non-coding downstream 288109 5842775 ~ 5843074 (+)
LOC113547289 LOC108267851 other upstream 114872 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 316988 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 491888 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 550234 4947137 ~ 4956467 (+)
G59366 ube3c other upstream 798303 4707442 ~ 4708398 (+)
LOC113547291 LOC108268023 other downstream 25130 5579796 ~ 5596225 (+)
trnat-ugu_2 NA other downstream 588866 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 1040460 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 1129670 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 2501390 8056056 ~ 8062839 (+)

Expression


Co-expression Network