LOC113524113


Basic Information

Item Value
gene id LOC113524113
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2036752 ~ 2043739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304116.1
GGTGGTGGTGAAACACCTTTCAGCTGTGAAACCACCTCAAGtcgaagaagaagcagcagaagaCGAGCTAGTCATCTCTACATGAAAACATGTTTGCATTTCTGTGTCTTGCATAGCATTTCCTGCCTGAGGTTTACAGCTACAGTTAAATCTgaaggtgtttaaaaaaagcttgttaCTGTGGCTGTATTTGGAGTGGTTAACTACTTTCTAACTGTATGCACCAAGAGaGACTCAAGAACATGATGCCCACAACGGACCCCAGTAGTCCTCAAACGACTGCTGGTATTCTTTGTACTATGACCAGTCAAGTACAAATGCACACAGAACCTCACCGCTGCTCATattgtggaaagagttttactcaCCAGAGTAGTTTACAAAtgcaccagcgcattcacacaggagaaaagccatttcactgctcacagtgtggaaagagtttcaGTCAGAGAAGTCATCTCCAGCTACATCaacgcattcacacaggagagaagccgtatcactgctcacaatgtggaaagagttttaatcAGAGAAGTCATCTGCAActacaccagcgcattcacacaggagagaagccatatcacTGTCCACAGTGTGGAAAAAGTTTCAATCAGAGAAGTCATCTCCAacgacaccagcgcattcacacaggagagaagccgtatcactgctcacagtgtggaagGAGTTTTGCTCGACTTAGTAATTTCCAACAACACCAACGAATTCATACAGGAGAGAAACCATTTATCTGCTTACAGTGTGGGAAACAATTTACTCACCAGTGTACTCTCAAAACACACCAACGCATCCATACAGGAGaaaagccgtatcactgctcacagtgtggaaagagttttgcCCGACTTAGTAATTTCCAACAACACCAACGAATTCATACAGGAGAGAAACCATTTAACTGCTTACAATGTGGGAGAAGATTTATTTACCAGTCTACTCTTAAAACACACCAACGCATCcatacaggagagaagccgtatcactgctcacagtgtggaaagaatTTTGCTGAATTGAGTAATTTCCAGCAGCACCAACGAATTCATACAGGAGAGAAACCATTTATCTGCTTACAGTGTGGGAAACGATTTACTCACCAGTGTAATCTCAAAACACACCAACGTATCCACACAGGAGaaaagccgtatcactgctcacaatGTGGAAAGAGTTTTGCTTACTTGAGTAATTTCCAACAACACCAACGAATTCACTCAGGAGAGAAGGCATTTCACTGCTCACaatgtggaaagagttttaatcTAGAGACTAATCTCCaacaacaccagcgcattcacactggagagaaaccgtatcactgtgcacagtgtggaaagagttttaatcACAACAGGTCTCTCCAGCGTCACCAGAGTATTCACAGaggagagaagccatatcactgctcccagtgtgggaagagttttaatcgAGAGAGTAATTTCCAAACacatcagcgcattcacactggagagaaaccTTACAGCTGCTCGCAGTGTGGAAAGAGGTTTAATCAACGAAGTGGTCTCAAAGCgcatcagcgcattcacacaggagagaagccgtatcactgctcacagtgtgggaagagttttaatcgACAGATTACACTCCAGTATCACCAACGCATTCACACTGgcgagaagccgtatcactgttcacaatgtgggaagagttttactcacCCGAGTAACCTCCAAatacaccagcgcattcacacaagAGAGAAGCCCTATCAGTGCTCACTATGTGGGAAGAGTTTTGTACAACTGAGTCACCTCCAACGACACCAGAACATTCACACAAGAGAAAAAACATAAGTGCTTAGATTGCGAACAGAGATTTACTTATTTAAGTACATTTAAGGCACGCAAGTGTACCAACACAGAGCCATCTGTTATTGACTTATGAATGTAACAATATAAGAAATGTTGTCCTGTGTTTTGATTTTACATTGTGTAAACTGTTTATATAGCTATTGGTATTGGTTTATCTGTTGTTGGATTACAGACCTCCTTGGAACTTGGAAATTTCTCAGTAAACACCAGTTGACTGACGAAAGATTaccatttattttcagatacaATCTGTTGATGTAGAATTCAATTCCATATAAATAGtgagagtgcaagcagggactgtTAACGAAAACTTGACTAAACAAGTAGGTTTTCAACCTAGACATAAAAATTGGCTTTTTCATAGCTGGGGGCTTTATTGGAAGCGTGGCCCTCTGCCCCTGCTATAGTCTTCATTATTTTAGGTACTGATACAGAACCTGCAACTTTTAATTGAAGCaggtgtggcggatcataacagaccaaaagttcactcaggtactgtggtgccAAACCATTCAGTCCATTATAGGtcattagtaatattttataattgatACAAAATTTTAATGGGAGCcaatgtaatgtgtaaaatatggGTAATATCTACttgagcttcaaatgagagactggagtcaatactcacaccaaggtctttgaGCATAGCAGTGAAGCCAATGTTTACTATTTTTACAAATGATTGTAGGCAGAGGTAGCAtattaaggggaaaaaagcagtgTATGTATAGAGATGTCACCATCAACATTTAGAAACTGATTGTGGTCAGTCTGATAAGACCTTAGCTGCTTCCTTCCAGTTTGTCTAAAAGAAAACTGTGGTCTCTGGTATCAAAAGCCACACCGAGGTTGAGCAatacaagcaaggagacacagaGGCCAATAGTGTGTCATTTACTACTTCAACCAGCGCTGTCTCAGTACTGAAAGATTTCATGCACATGATTTCTTTGCAAATATGAGATTAACTGTGGTGCTACAACCTTTTTAAGAATCTTCGTGATATAAAATTTTGATTTAAGCTCATAGTTTGTCTGCTGACAACGGCCAAGGTCAGGTTCAGTGATTTGATAgctgctagtttaaaggatttagaTACATAGTCAATTCTAAAGGAggaactttttttatttatgaacttCTATTATTTTTAGTTCAAGAAGTTCAATTGCTTCTGGTAGCACTTGTTTAAGAAAATGCCCTAGTTAGGAATCTTGTAcataagttgattattttgaagAGGAAATCAAGGAAATTAATTCAGTCTGTTGGAATGGAGTATAAAAGATTCTAATTGCTCTACTGGTGAGCTTGCATTGTCCTCAACATAGGCAGTTATCAAACTGTCAGACTTTAAGTTAATACTCCaaatttctgattgttttattttgccaTGAAAAAAAACTTGTAACATAATCACTATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304116.1 True 3308 mRNA 0.40 2 2036752 2043739

Neighbor

gene id symbol gene type direction distance location
LOC113524114 NA coding downstream 14556 2006109 ~ 2022196 (-)
trnav-cac_1 NA coding downstream 36702 1999978 ~ 2000050 (-)
LOC117597205 NA coding downstream 58741 1967988 ~ 1978011 (-)
usp14 usp14 coding downstream 158766 1868861 ~ 1877986 (-)
LOC113524143 crhr2,LOC101476678 coding downstream 279679 1693077 ~ 1757073 (-)
LOC113524112 NA coding upstream 1423 2045162 ~ 2056716 (-)
LOC113524117 NA coding upstream 13733 2057472 ~ 2081756 (-)
LOC113524116 NA coding upstream 27272 2071011 ~ 2074514 (-)
tbc1d14 tbc1d14 coding upstream 71864 2115603 ~ 2168651 (-)
kiaa0232 kiaa0232,zgc:158564 coding upstream 131801 2175540 ~ 2192893 (-)
G58276 NA non-coding downstream 58209 1978247 ~ 1978543 (-)
G58263 NA non-coding downstream 58899 1946349 ~ 1977853 (-)
LOC117597206 NA non-coding downstream 74542 1958805 ~ 1962210 (-)
LOC113524104 NA non-coding downstream 87177 1947065 ~ 1949575 (-)
G58209 NA non-coding downstream 91948 1938950 ~ 1944804 (-)
G58537 NA non-coding upstream 23032 2066771 ~ 2096126 (-)
LOC113524119 NA non-coding upstream 42120 2085859 ~ 2086780 (-)
LOC113524118 NA non-coding upstream 46861 2090600 ~ 2092014 (-)
LOC117597186 NA non-coding upstream 184507 2228246 ~ 2230981 (-)
G58585 NA non-coding upstream 224453 2268192 ~ 2274161 (-)
G58190 NA other downstream 343755 1692326 ~ 1692997 (-)
G57868 NA other downstream 987911 985911 ~ 1048841 (-)
LOC117597039 NA other downstream 1007727 1010225 ~ 1029025 (-)
G57838 NA other downstream 1290721 683488 ~ 746031 (-)
G58534 NA other upstream 27285 2071024 ~ 2104011 (-)
LOC113523983 NA other upstream 160813 2204552 ~ 2222099 (-)
trnag-ucc_1 NA other upstream 614264 2658003 ~ 2658074 (-)
trnag-ucc_2 NA other upstream 623028 2666767 ~ 2666838 (-)
trnag-ucc_3 NA other upstream 628161 2671900 ~ 2671971 (-)

Expression


Co-expression Network