LOC113524114


Basic Information

Item Value
gene id LOC113524114
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2006109 ~ 2022196 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304119.1
aaatacaacCTGTATCTAATCTGCTATGTCACCAGGGGCTTAATGCTCCCAGTAGGGGCAACTTTGGTGAACAGATCTGAGAGGAGAGATCATTAGAAGCAATTCTAATGGCCCTTGTGAAAGCTACCAGAAAGTCTACATGTACATAGCCCAGAGACTCAAGAACATGATGCCCACAACGGACCCCAGTAGGCATCAAACGACTGCTGGTATTCTTTGTACTATGACCAGTCAAGTACAAATGCACACAGAACTTCACCGCTGCTCATattgtggaaagagttttactcaCCAGAGTAGATTACAAAcgcaccagcgcattcacacaggagaaaagccatttcactgctcacagtgtggaaagagtttcaATCAGAGAAGTCATCTCCAGCTACACCAGCGCATtcatacaggagagaagccgtatcactgctcacaatGTGGAAAGAGTTTTGCTGACTCGAGTAATTTCCAACAACACCAACGAATTCATACAGGAGAGAAACCATTTATCTGCTTACAGTGTGGGAAACGATTTACTCACCAGTGTACTCTCAAAACACACCAACGTATCCATACAGGAGAAAAGCCGTATCACTGTTCACAATGTGGAAAGAGTTTTGCTGACTCGAGTAATTTCCAACAACACCAACGAATTCACTCAGGAGAGAAGTCGTATCACTGCTTACAATGTGGAAAGGCTTTTAATCTAGAGACTAATCTCCaacaacaccagcgcattcacactggagaaAAACCGTTTCGCTGCgcacagtgtggaaagagttttaatcACAGCAGGTCTCTCCAGCGTCACCAGAGTATTCACAGaggagagaagccatatcactgctcacagtgtggaaagagttttaatcGAGAGAGTAATTTCCAAACacatcagcgcattcacactggCGAGAAACCTTATAGCTGCTCGCAGTGTGGAAAGATGTTTAACCAAATAAGTGCTCTCAAAGCgcatcagcgcattcacacgggagagaagccgtatcactgctcacagtgtgaaAAGAGATTCATTCAGAGAAGTCATCTCCAGTATCACCaacgcattcacacaggagaaaggccgtatcactgctcacagtgtgggaagagttttattcaGCAGAGTACACTCCAGTATCACCAGcatattcacacaggagagaagccgtatcactgctcagagtgtggAAAAAGTTTTACTCACCCGAGTAACCTCCAAAAACACCAGcgcattcacacaggagaaaagccttttcactgctcacagtgtggaaagagtttcaATCAGAGAAGTCATCTCCAGCTACACCAACGCATtcatacaggagagaagccgtatcactgctcacaatGTGGAAAGAGTTTTGCTAGACTTAGTAATTTCCAACAACACCAACGAATTCATACAGGAGAGAAACCATTTATCTGTGTACAGTGTGGGAAACGATTTACTCACCAGTGTACTCTCAAAACACACCAACGCATCCATACAGGAGaaaagccgtatcactgctcacaatGTGGAAAGAGTTTTGCTGACTTGAGTAATTTCCAACAACACCAACGAATTCACGCAGGAGAGAAGTCGTATCACTGCTTACAATGTGGAAAGGCTTTTAATCTAGAGACTAATCTCCaacaacaccagcgcattcacactggagagaaaccgtatcactgtgcacagtgtggaaagagttttaatcACAACAGGTCTCTCCAGCGTCACCAGAGTATTCACAGaggagagaagccatatcactgctcacagtgtgggaagagttttaatcgAGAGAGTAATTTCCAGACacatcagcgcattcacactggCGAGAAACCTTATAGCTGCTCGCAGTGTGGAAAGAGGTTTAATCAACGAAGTGGTCTCAAAGCgcatcagcgcattcacacaggagagaagccgtatcactgctcacagtgtgggaagagttttaatcgACAGGATACACTCCAGTATCACCaacgcattcacacaggagagaagccgtatcactgcccAGAGTATTGTGGAAGGAGTTTTACTCAAAGGGTCCATCTCAAGACACACCAACGAATtcatacaggagagaagccgtatatctgctcacagtgtgggaaacGTTTTAGTCGACTGAGTACTTTCCAGCAACACGAAAgaattcacacaggagagagaccttttatctgtttacagtgtggaaagagttttacacGCCAGCTTTATCTCCAGCAACACCAGAATATTCACACAGGAGCAAAACCGtatcactgttcacagtgtgggaagagttttaatcaaGATAGTAATCTCCGACGACACCAGCGCgttcacactggagagaaaccatatcagtgctcacagtgtggaaacAGTTTTGCTCAGAAACGTACTTTCGAAGCACATGAGCGCactcacacaggagagaagccatattattgctcacagtgtgggaagagttttaatcgAGAGAGTACATTCCAaaaacaccagcgcattcacaccggagagaagccttatcactgctcacagtgtggcaAGAGTTTTGCTGAGAGAGGTACACTTACAGCACACCAGCGagttcacacaggagagaagccgtatcactgcgtAAAATGTGGAAAGAGCTTTAATCACCGGAGTGCTCTCCAACagcaccagcgcattcacaccgGACAGAAGCCCTATCAGTGCTCAGAGTGTGGAAAGAGCTTTACTCAGTCGGGTACTCTTCACACACACGAGCGCATtcatacaggagagaagccgcATCACTGTTCagagtgtggaaagagtttcaCTTACCTGAGTGCTCTCCAaacacaccagcgcattcacacaggagagaagccatatcactgctcacattTTTGTGGGAAAAGTTTCACTGTGCCTGCTCATCTAAAAACACACCAACGTGTCcatacaggagagaagccgtatcactgctcacagtgtgggaagagtttcagTCAGCGGGGCACTCTTCAACGACACCTTCACATTCACACTGGAGAAAAACCGTATTACTGCTCAgtgtgtgggaagagttttagtAAAGAAAGTGCTCTGAAAACGCACCAGTTccttcacacaggagagaaaccgtatCAGTGCTCGCAGTGTGGCAAGAGTTTCTGTTATGAAAGTGCTCTAAAGTCACACCAACGCATTCACACTGGAGACAAACCGTATTCCTGTAACGAGTGTGGGAAGAGGTTTGCTCACCATTACGTTCTCGTAGCACACCAGCGTATTCACACGAGAGAAAAGCCATATCACTGCTCAGAGTGCGGGAAGAGTTTCCGTTATAAGAGTGCTCTAAAGtcacaccagcgcattcacacaggagaaaagccCTATTCCTGTTcccagtgtggaaagagttttgcTCAGCACTACGTTCTCATAGCACACCAgagcattcacacaggagagaagccgtatcactgctcataGTGTGGGAAGTGTTTCCGTTATAAGAATGCTCTAAAGtcacaccagcgcattcacactggagaCAAGCCGTATTCCTGTTcccagtgtggaaagagttttgcTAAAAATAGTACTCTCAAAGttcaccagcgcattcacacaggagagaagccgtatcactgcttaAAATGTAGGAAGAGTTTTACTCAGCAGTTTACTTTACAACTgcatcagcgcattcacacaggagcaAAGCCGTATTACTGTTCTGAGTGCGGGAGGGGTTTTACTCACCTTTACTCTTTACAAatacaccagcgcattcacacgggACAAAAGCCGTATTATTGTTCACAGTGTGAGAAGAGTTTTGCTGTGAAAAGTAATTTCACCAGACACCAGAGCATTCACACAGGAGTGAAGCCGTACCAGTGCTCAGGGTGTGGAAGGAGATTTACTTATTTAAGTACATGTAAGACACACAAGTGTGCCAGCACAGCTGTCAACTCGTGACATGTGAATGAGACAACAAATACCAACCTGTGTTTTGACTTGTGTATGTATATAGCTGTCTATGGGTATTTGAATTTATCCTTTTGAAGCTTCAGAAGTCAAATACTGAAATCACTATGTCTACATTTCTGTTGTGCCCCAGTCTACGGCTGGAAAGAtaacagaaaaaatgtgatggGAAATAGTGGAAGGATAAAGGATGCTGGCAAGAATTTCTCAGATATGaagatacagtcaggtccataagtatttggaccgtgacacaattttcataattttgtctctgtacgccaccacagtggatttgaaa

Function

GO: NA

KEGG:

id description
K09228 KRAB; KRAB domain-containing zinc finger protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304119.1 True 4271 mRNA 0.45 5 2006109 2022196

Neighbor

gene id symbol gene type direction distance location
trnav-cac_1 NA coding downstream 6059 1999978 ~ 2000050 (-)
LOC117597205 NA coding downstream 28098 1967988 ~ 1978011 (-)
usp14 usp14 coding downstream 128123 1868861 ~ 1877986 (-)
LOC113524143 crhr2,LOC101476678 coding downstream 249036 1693077 ~ 1757073 (-)
LOC113524144 LOC101884462 coding downstream 365137 1640406 ~ 1640972 (-)
LOC113524113 NA coding upstream 14556 2036752 ~ 2043739 (-)
LOC113524112 NA coding upstream 22966 2045162 ~ 2056716 (-)
LOC113524117 NA coding upstream 35276 2057472 ~ 2081756 (-)
LOC113524116 NA coding upstream 48815 2071011 ~ 2074514 (-)
tbc1d14 tbc1d14 coding upstream 93407 2115603 ~ 2168651 (-)
G58276 NA non-coding downstream 27566 1978247 ~ 1978543 (-)
G58263 NA non-coding downstream 28256 1946349 ~ 1977853 (-)
LOC117597206 NA non-coding downstream 43899 1958805 ~ 1962210 (-)
LOC113524104 NA non-coding downstream 56534 1947065 ~ 1949575 (-)
G58209 NA non-coding downstream 61305 1938950 ~ 1944804 (-)
G58537 NA non-coding upstream 44575 2066771 ~ 2096126 (-)
LOC113524119 NA non-coding upstream 63663 2085859 ~ 2086780 (-)
LOC113524118 NA non-coding upstream 68404 2090600 ~ 2092014 (-)
LOC117597186 NA non-coding upstream 206050 2228246 ~ 2230981 (-)
G58585 NA non-coding upstream 245996 2268192 ~ 2274161 (-)
G58190 NA other downstream 313112 1692326 ~ 1692997 (-)
G57868 NA other downstream 957268 985911 ~ 1048841 (-)
LOC117597039 NA other downstream 977084 1010225 ~ 1029025 (-)
G57838 NA other downstream 1260078 683488 ~ 746031 (-)
G58534 NA other upstream 48828 2071024 ~ 2104011 (-)
LOC113523983 NA other upstream 182356 2204552 ~ 2222099 (-)
trnag-ucc_1 NA other upstream 635807 2658003 ~ 2658074 (-)
trnag-ucc_2 NA other upstream 644571 2666767 ~ 2666838 (-)
trnag-ucc_3 NA other upstream 649704 2671900 ~ 2671971 (-)

Expression


Co-expression Network