LOC113526634


Basic Information

Item Value
gene id LOC113526634
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7049124 ~ 7082000 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304126.1
AtaatggtgtgatgaagctgcaCTCACGCTCCGCCCACATTCAGGACGCAAAGCAGAGAGCTCCAGCTgcagcactcacacacacacaccaacactcacactcacacatcctgctgcttttgtggATTACTGTTTTGATGGCGACATTTCTGACTTTCTGTATTTTAATGACCACGTTTTGTACTACTGTAATCTGGGTTGAAGCTGATAAAGGAGAGCTGCGAACGCTCCATCGACAGAAAAGAGAATGGATCGTCCCTCCGAATAAGCTGTACGAGAATGTGGATTATACCAGAAATGAATTTATTGCAAAAATCCGATCAGATGAAGAGACCAGGACGGATATTGTATATTCTCTAATAGGACCTGCAGCGGACGAGGGATTATTCAGCGTAGGTGCAAAGAATGGCTACGTCAGGATTCATGGCATCTTGGACAGAGAGAAAACCGCTAGTTATGACCTCAAAGGGAGAGCTATGCTAAGAAATGGATCACTTGCTGAAAAGGACATCGAGTTGAAAATCATAGTTCTAGACAAGAATGACTGGGTCCCTGTGTTTAATGTTCGGGTGAATGGCTCTgttgaagagctcagtgacaaAGACACCCACGTAATTGAAATCAAAGCTTTCGATGGAGATGAGCAAGACACACTGTATTCAAAAATTGCCTACAGAATTATACAGCAGGAGCCAGCTGGAGAGATGATGTTCAAAATCGAGCGATCATCTGGTCAAATCAAAGTCAGAATGAACACTCTGGACCGAGAGAGCCAAGAAACTTACAAACTGATAATCATGGGTACAGACATGGACGGAGTCAATTCCGATCCCCAAAACAAACCACTGACAGGAACAGGGACTGTGACCATCAACATACTTGATGTCAATGATAACATCCCGATATTAGAGAAGGACTCTTACGAGAGTAGTGTGGAAGAGAATATCAAGAATGTGGAAGCAGTCCGGCTTAAGGTCATAGACAAGGATAAGCCCCACACTGAGAACTGGGAGGCTGTGTTCACCATCATTTCTGGAAATGAGGCCGGTCACTTCAAAATCACCACAGACCCCAAAACTAACGAGGGCATCCTGATAGTCACTAAGGAGCTGAACTATGAGTGGTTGAACGAGGTCAATCTGACAGTGTTGGTCAGGAACAAGGCAACTTATCACAAGTCAGTGGTGACTGACAAGCCCATAACATATCCCATTAATATCAAAGTGGTGAACGTGCCCGAAGCCCCTCATTTCCACCCCACCGTGAAAGTTATCTCCATTTCTGAAGACCACAAAACTATTGACCTGAAGAAGGTCATCACCACCTACACAGCCACGGACAGTGATACACTGTTAACCGCCAGTTGTAGGTATGTTAAAGGAGATGATGTTGACAACTGGGTGAGCATTAATGAGCAAACAGCCGAGATCAGATTCAACAGATATCCAGACCGCGAGTCCAAGTTCCTGATCAATGGAACATACTACGCCAAAATCTTATGCATCACCAGTGATTTTTCACCCAAAACTGCGACAGGAACTCTTGCAATTCAGGTGCATGATTTTAACGACCACTGTCCGATTCTGACCAGCTCAGTCCAAACACTGAGCTACGGTGACAGCGTAGTGTACGTCACAGCCAAGGATGAGGATAAATACCCCAATGCAGATCCTTTTGAATTCAGAATGATTACCAAGAGCACAAAAGAGAACTGGAGAGTCGAGCGTCTCAATGGAACAACAATCATCTTGCGCAGCCAGGAGATCCTGTGGCCGGGACACTACACAGTGGGACTGGAGGTGCAAGACCAGCAGGGAAAGTCCTGCGAGGTTCAAAAGCTTCAGGTAGCTGTGCTGACTGAGAGACAGACCAGCAAAGGCATTGGACTGGGAGGAGGTGGAGTTCTGGCACTACTGCTAGGAATCCTGCTTCTCTTGTTGATTCCAGTGCTTTTGCtgttgtgtgagtgtggagGAGCTGCAGCTCTTGGTAGTTTCCAGGCCTTCCCCTTCGAACAAAATCAGGAGCTCATCAGCTATCACACTGAAGGCCAAGGAGAGGATAAGGAACCAGCACTGCTGTCCCAGGTGCCCCTGAATGTAAACGGTGGCAGCAGCATGAAAGTGGGAACTGGATGGAGAACACATGAAGGCTCAAGGAAATATGGATGGGAATCTCAGAAGGAATTCATAAATCAGTGGCATGTCAACCAGTATGAGGGTGACTATGCTGATAAAAAGGCAAATGTAATTGGGggaaattctgaattttttacAATGAGCACCCTCGATTACATGGCTCTGCCTGAGACCTACTTAGGCAACTACTATACGAAGAAAACGCTGGATATGGTGAAGCAGGAAGCTAGTACAAACCAGCTGATGTTGTCTAACTATGAAGTCTGCAACTCAGTCACAGGCTCCTTAGAGGACATCTGCAGCCATCTACATGAGGAAAACAATCTGGATTTCCTCGATGACCTCGGGCCTCAGTTCAAAAGGCTCGCTGAAATTTGCTGTGGGTCGACCATCGAATTCGAGGTCAGCTCCACTCCCACGCCTCCCAAAACGGTCTCATCCAGTTCACAAGTGGGCATCAAAGTGCAAGGTGCTGTTGGTGGTGTCCACAGTGAGGCAACCTCCATCTCTGCATCcagctcctcctccaccacccaAATCACAACTGCAAATTATGGAGAGAGTATTATCAGTGGAGGCGCCACATCAGCAGCCACTGTAGGCCAAACTCTTCTCGTCCAGCAGCCATCTGTCTACCTTTCCTCTACACCCATGTACGTAGTGGAGCAACAGCATCACCCCACCCTTCTTCTGGCTTCTGGTCCAATGCTGGGTGTTCAGAAAAGCAACATGGTACTGGTGGAGAAAGGGGGTACCAACATGGCAATCGCTGCCCAGAACACCCTTCCCAGGCTAGGGTTGCAGCAATCAAACACCAGAGTACTGGTGGATCCAGGTATTGGAGGCACAGTGGTGCATGGGTTTCCAGGCCAACCTGAGACTCAGGGCACCATTTCTGGTACCTATCGGGTCGTAGAGAGCCGACGAGTTGAGAGCACGGAGCCTGTAGGTGTCATGCAGAGCTCCTCACACTCCAGCACCAGCAAAAATCAGAGTATGCAGGCCAAAGAGCAAAGTGGAGGGATCATGGCTTTAGGAAACGCATCAGATATCCCAAGTGCCATTTCATTGTTGCAGCAAGACATGCCTCAATTTGATGTGCCAAATGGTGGCACTCACAAAGAGGTGCGAGAGGAAAGGGTTTCGGTTGTTGAGAAAAGTTTCCAGTCGAGCTCCAGCTCCTAATGCAactacaaacacactcacacattctaCATGCACAGCCTTATTTTCATGAATTCAGCTATTAGTTCTGTGAAGAATATCCCATAGAACTGACTGATCAGAAGAGCAAGTTTGCTCCTAACAAAGAGAAACCTGAACACTTTCTGAAGAtccattaattaattcatagtGAAGGGCATGAGTAGTCAATTAATTGAGTACATCTTATGTAGCCTCataatcaattaataaaatattacccatataaatcatatttttatggGACTAGTGTCTCTGGGTGGCATTTTTCCATCTCTTccattataaatctggaatccAGAGTTCATACAAACTGGATGTTTGCAAAACGTGtggtcatgttttgttttatatgcaTTAGTTATTTTAATACAGAGAACACTGTTGGGCCTGCAGGATCACTGATTTGTTGATTTTGCAATGTGGAGATGTTTTTCAGATAGCAAAAGACAACTTCTATAAAATAACCAGTAAAATTATCAGACAAATGCACAGTTTATCAAAAAAACAGTCGGTAATTTGGTCTGTAATGTTCcatggagaagagagagagagcatgaaagCAGCACAGCTTTCACTTTTTATGGTTTTTGCAGTACGAATGCATAACACTATTATTCTATTATAgttataatgtttttgttattagCATAAATTGATGCTGCtgagtaaaacaaaataatgtcaGGCTGTTTGTTATAAAATTTAATCAGTACTGGGTAACTAGGAGATTGTTTGTATGGGAAAGTGTGTTTGAGTATTCAGCTAGAATGTCCATCACTAACAATTAGCATTATAGGATAGGCTTTTTAGGAGGTTTTGACATACTGGTGTGCATTTCATGTAACAGAGATGGGTTTCTAAACAACATATGTATCATCAGTTTATTTCTATCTTCAGAtagcattttttgtttgtttgtttctctgttaCGTTTTTCATTTCTAAGCCAATAATGGAAATAGAGTGCACAGCATTTCCCTCATATTACTATATTTTCATTATGAAAGCGTTCaactggaataaaacactagaattaaaacaaaattcatCTAAGTGTGACCAGGGCTCTACGGGTGACTAAAACACTCTAAATTGTGCAAGGATTGTGCGCTGTTGATACAAGAACTGGGTGAATTTGTGCTGTAAGACTGATAAAAATCTCTTAATGTCCTGGAATAAACTGAAAGCCATCATCTGTGTCTTCTTTAGGATTTGAAACCAGTTTTTCAACCCCAGACAGAAACTTTCCCTCCctaacctgttttttttt

Function

GO: NA

KEGG:

id description
K07597 DSG2; desmoglein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304126.1 True 4614 mRNA 0.44 14 7049124 7082000

Neighbor

gene id symbol gene type direction distance location
prkacbb LOC108411205,LOC108267323,LOC103034112,LOC103396312,LOC102779523,LOC105935432 coding downstream 6335 7021733 ~ 7042789 (-)
exosc4 exosc4 coding downstream 30847 7015028 ~ 7018277 (-)
LOC113526956 NA coding downstream 53664 6989280 ~ 6995460 (-)
LOC113526837 NA coding downstream 90045 6956772 ~ 6959079 (-)
LOC117597068 NA coding downstream 136551 6869370 ~ 6912573 (-)
dsg2l NA coding upstream 13820 7095820 ~ 7118074 (-)
LOC113526521 LOC108267321,LOC108436859 coding upstream 614900 7696900 ~ 7727146 (-)
si:ch211-241e1.3 lama3 coding upstream 729655 7811655 ~ 7918897 (-)
rpe65a rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 983202 8065202 ~ 8078853 (-)
efcab14 efcab14 coding upstream 1024893 8106893 ~ 8118886 (-)
G60669 NA non-coding downstream 167789 6878644 ~ 6881335 (-)
G60672 NA non-coding downstream 256172 6785327 ~ 6792952 (-)
G60503 NA non-coding downstream 406939 6641971 ~ 6642185 (-)
LOC113547257 NA non-coding downstream 446898 6587543 ~ 6602226 (-)
trnae-cuc_12 NA non-coding downstream 605309 6443744 ~ 6443815 (-)
G60727 NA non-coding upstream 148654 7230654 ~ 7230904 (-)
G60726 NA non-coding upstream 160125 7242125 ~ 7246436 (-)
G60846 NA non-coding upstream 359262 7441262 ~ 7538818 (-)
G60852 NA non-coding upstream 401121 7483121 ~ 7483703 (-)
G60830 NA non-coding upstream 413402 7495402 ~ 7500703 (-)
LOC117597002 LOC107721237 other downstream 149897 6881382 ~ 6899227 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 1089579 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 1555085 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 1962767 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 2104103 4928360 ~ 4945021 (-)
LOC113526822 LOC108268278 other upstream 1370610 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 1489496 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 1557468 8639468 ~ 9528825 (-)
G61478 NA other upstream 1901234 8983234 ~ 8984453 (-)
LOC113540087 LOC108267275 other upstream 2232849 9314849 ~ 9327431 (-)

Expression


Co-expression Network