LOC113547287 (LOC108267871,LOC108267869)


Basic Information

Item Value
gene id LOC113547287
gene name LOC108267871,LOC108267869
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5904196 ~ 5917960 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304148.1
CACTCCATATCACACCAGCCATAAAGAGCTCTTCATTTTACAAAATCATTGAcctttgcagtgtgtgttagtggtagTGTTCATCCTGAGTTTGAGCTCCTCACTGCTCCTTCAGCATGGACCACTCGGCTGCACTGTggacatttctgatttttagcATAACTCTCCTCAGCTTGGGGGTCAGGGCTCTGCCAACAAGTAAAGTAACAGAGTATGATGTAGATGGTGGAAAAGAGGATCTATTTGAGGTCAATCAAGCGGCCGGTCTTGAGCTCTTCGAGGGAGATATTTTATATGATGAGAAACAAGGGAGGAACTCCATAATTGGGGATGAATACTTATGGCCCACCACTGTGCCGTACTATTTGGAGGATGATTTGGATATTAATGCTAAAGGCGTTATAATGAAGGCGTTTGAACAGTATCGCCTGAAGACCTGCATTGACTACAAACCCTGGAGCGGAGAAGAGAACTACATCTCTGTGTTTCAAGGCAACGGGTGTTACTCCTATGTGGGGAACCGACACGTGGGAAAGCAGAGCTTATCCATCGGTGCAGGATGTGACCGAATCGCCACCATCGAACACGAGTTCCTTCATGCCCTGGGGTTCTGGCACGAGCAGTCACGCGCCGATCGTGACGACTACGTCACCATCATGTGGGATCGCATCCAAGAAGGCAGGGAGCACAATTTCAATAAATATGATGACACCACATCCAGCTCCCTGAACGTACCCTATGACTACGGTTCCATGATGCACTACAGCAAGAACGCCTTCAGTAACGGCACCGAGCCCACCATCGTCACCAAGATTCCCGCCTTCAGCGACGTCATCGGCCAGCGCATGGAGTTCAGCGACAGTGACCTGCTCAAGCTGAACAGGCTTTATAATTGCACAAGAGCCACAACTTTCCTGGACACCTGTGACTTTGAGCTGGAGAATATATGTGGGATGATCCAAGGTCAGGGTGACAAGGCAGACTGGGAACATGTCACCAAGGCAACTGGTGGACCCGACACAGACTATTCTAACATGGGACGCTGTACTGGCACAGGCTACTTCATGCACTTCAGCACCATCAGTGGCACCGAAGGGGACACTGCCCTGTTAGAAAGCAGGCTGCTCTACCCTAACCGCAACTATCAGTGTCTACAGTTCTTCTACTATCACAGTGGAAACCCCAATGATAAGCTGGAGATCTGGGTGAGAGAATACAATGAAATCAACCCTAGCGGAACACTACGCATGATCGAGACAATAACTGgaCTGCCTGAGCCGTTATGGCAGCTACACCATGTTAACCTAGACGTCTCCACAAAGTTCCGCGTGGTATTTAAAGGTACAAAGGGTGCTGGAAGCTCCACAGGTGGGCTCTCTTTGGACGACATCAATCTTTCTGAGACTGCCTGCCCAGAACATGTGTGGCGGATCAAGAACTTCAAAAGTATTATGGAAAACACACCTAGGGACACTCCCATATACAGCCCACGCTTTCAGTCAAAGTATGGCTACACCTTCCAGATGAGCTTGTATCCAAGTGGCACTACGACCTCCCCAGACAATTTGGGAGCCTTTGCCCATCTGACATCTGGTGATGACATGATTGATGGTAATCTCACTTGGCCCTGCCCATGGATGCAGATTACTATGATGCTAATGGATCAGAATGCGGACATCCGCAAACGCATGTCCAACCAGAGAAGTATCACAACTGACCCTAATGTGAAATTAACAGAATCTTCAATGTATACCTGGGACAACCCACGAAAAGTGGGAGCGCAAGTAACAGATGTGGATGGGACTAAATACTTCAGAGGACCAGGATATGGAACATCTGGATACCTGACTCAGGCCAGAGCACTCAGCAGAGACTTTATCAAGGGTGGAGATGCCATCTTCCTCCTCAGCATGGAAGATATATCAAACTTGCTTCTTTCTCAGCCCCTCCCTTCGACAACCGTCCCCACGACCCCTACTCATGATCTATGTGCCTCggtaaaatgtgaaaatgatggCGTGTGTGTTATTGACAATGGTGTAAAAGCAGCCTGCAGGTGTGTCGTAGGTAACGACTGGTGGTACTACGGGGACAGGTGTCAGTTCAAGAGTTCGAACCAGGACGGTGTGGTGACGGCGGTCGTGTCCTCGGTTGTAGTCTTTTTCGTCATGGTGGTGGTGACGGTAGTGAGTGTGGTGTGTCTGAAGAAGAAGTAtaagaagaaaatgaatgacATGGGGGCCGGCATTACCACACAAAATGTCCATACAGCATCCTGAATCATTTAATCAGTAGTGGTAGTGGCATTATACACTTATGTATGAATATAACAAGtatattttcatgtcatttcaatctcaagaaaaataaaatgattttcattCGTTTCCGAAACTTGGATGTGAAA
>XM_034304149.1
CACTCCATATCACACCAGCCATAAAGAGCTCTTCATTTTACAAAATCATTGAcctttgcagtgtgtgttagtggtagTGTTCATCCTGAGTTTGAGCTCCTCACTGCTCCTTCAGCATGGACCACTCGGCTGCACTGTggacatttctgatttttagcATAACTCTCCTCAGCTTGGGGGTCAGGGCTCTGCCAACAAGTAAAGTAACAGAGTATGATGTAGATGGTGGAAAAGAGGATCTATTTGAGGTCAATCAAGCGGCCGGTCTTGAGCTCTTCGAGGGAGATATTTTATATGATGAGAAACAAGGGAGGAACTCCATAATTGGGGATGAATACTTATGGCCCACCACTGTGCCGTACTATTTGGAGGATGATTTGGATATTAATGCTAAAGGCGTTATAATGAAGGCGTTTGAACAGTATCGCCTGAAGACCTGCATTGACTACAAACCCTGGAGCGGAGAAGAGAACTACATCTCTGTGTTTCAAGGCAACGGGTGTTACTCCTATGTGGGGAACCGACACGTGGGAAAGCAGAGCTTATCCATCGGTGCAGGATGTGACCGAATCGCCACCATCGAACACGAGTTCCTTCATGCCCTGGGGTTCTGGCACGAGCAGTCACGCGCCGATCGTGACGACTACGTCACCATCATGTGGGATCGCATCCAAGAAGGCAGGGAGCACAATTTCAATAAATATGATGACACCACATCCAGCTCCCTGAACGTACCCTATGACTACGGTTCCATGATGCACTACAGCAAGAACGCCTTCAGTAACGGCACCGAGCCCACCATCGTCACCAAGATTCCCGCCTTCAGCGACGTCATCGGCCAGCGCATGGAGTTCAGCGACAGTGACCTGCTCAAGCTGAACAGGCTTTATAATTGCACAAGAGCCACAACTTTCCTGGACACCTGTGACTTTGAGCTGGAGAATATATGTGGGATGATCCAAGGTCAGGGTGACAAGGCAGACTGGGAACATGTCACCAAGGCAACTGGTGGACCCGACACAGACTATTCTAACATGGGACGCTGTACTGGCACAGGCTACTTCATGCACTTCAGCACCATCAGTGGCACCGAAGGGGACACTGCCCTGTTAGAAAGCAGGCTGCTCTACCCTAACCGCAACTATCAGTGTCTACAGTTCTTCTACTATCACAGTGGAAACCCCAATGATAAGCTGGAGATCTGGGTGAGAGAATACAATGAAATCAACCCTAGCGGAACACTACGCATGATCGAGACAATAACTGgaCTGCCTGAGCCGTTATGGCAGCTACACCATGTTAACCTAGACGTCTCCACAAAGTTCCGCGTGGTATTTAAAGGTACAAAGGGTGCTGGAAGCTCCACAGGTGGGCTCTCTTTGGACGACATCAATCTTTCTGAGACTGCCTGCCCAGAACATGTGTGGCGGATCAAGAACTTCAAAAGTATTATGGAAAACACACCTAGGGACACTCCCATATACAGCCCACGCTTTCAGTCAAAGTATGGCTACACCTTCCAGATGAGCTTGTATCCAAGTGGCACTACGACCTCCCCAGACAATTTGGGAGCCTTTGCCCATCTGACATCTGGTGATGACATGATTGATGGTAATCTCACTTGGCCCTGCCCATGGATGCAGATTACTATGATGCTAATGGATCAGAATGCGGACATCCGCAAACGCATGTCCAACCAGAGAAGTATCACAACTGACCCTAATGTGAAATTAACAGAATCTTCAATGTATACCTGGGACAACCCACGAAAAGTGGGAGCGCAAGTAACAGATGTGGATGGGACTAAATACTTCAGAGGACCAGGATATGGAACATCTGGATACCTGACTCAGGCCAGAGCACTCAGCAGAGACTTTATCAAGGGTGGAGATGCCATCTTCCTCCTCAGCATGGAAGATATATCAAACTTGCTTCTTTCTCAGCCCCTCCCTTCGACAACCGTCCCCACGACCCCTACTCATGATCTATGTGCCTCggtaaaatgtgaaaatgatggCGTGTGTGTTATTGACAATGGTGTAAAAGCAGCTGCAGGTGTGTCGTAGGTAACGACTGGTGGTACTACGGGGACAGGTGTCAGTTCAAGAGTTCGAACCAGGACGGTGTGGTGACGGCGGTCGTGTCCTCGGTTGTAGTCTTTTTCGTCATGGTGGTGGTGACGGTAGTGAGTGTGGTGTGTCTGAAGAAGAAGTAtaagaagaaaatgaatgacATGGGGGCCGGCATTACCACACAAAATGTCCATACA

Function

NR:

description
PREDICTED: meprin A subunit beta-like isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08606 MEP1B; meprin B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304148.1 True 2407 mRNA 0.48 14 5904196 5917960
XM_034304149.1 False 2269 mRNA 0.49 14 5904333 5917960

Neighbor

gene id symbol gene type direction distance location
LOC113547299 LOC108268057,LOC108440942 coding downstream 165974 5726590 ~ 5738222 (-)
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding downstream 209961 5617863 ~ 5694235 (-)
igfbp1b LOC108268024 coding downstream 301929 5596290 ~ 5602267 (-)
tada1 tada1,LOC106569412 coding downstream 461493 5435223 ~ 5442703 (-)
fggy fggy coding downstream 477427 5410822 ~ 5426769 (-)
LOC113547251 LOC108267869,LOC108267871 coding upstream 13370 5931330 ~ 5949680 (-)
LOC113547282 LOC108267872 coding upstream 38167 5956127 ~ 5967304 (-)
ripk1l ripk1 coding upstream 54664 5972624 ~ 5986215 (-)
trnak-cuu_3 NA coding upstream 262927 6180887 ~ 6180959 (-)
mylk4a LOC108268043 coding upstream 600503 6518463 ~ 6560326 (-)
G60151 phlpp1,LOC101073770,LOC106599727,LOC106569160,LOC107698933 non-coding downstream 5181 5897379 ~ 5899015 (-)
G60092 NA non-coding downstream 52850 5785295 ~ 5851346 (-)
G60136 NA non-coding downstream 63722 5838134 ~ 5840474 (-)
G59992 NA non-coding downstream 177762 5725978 ~ 5726434 (-)
G59987 NA non-coding downstream 179435 5724525 ~ 5724761 (-)
G60181 NA non-coding upstream 51935 5969895 ~ 5972613 (-)
G60311 NA non-coding upstream 461738 6379698 ~ 6379897 (-)
G60328 NA non-coding upstream 471743 6389703 ~ 6390077 (-)
G60333 NA non-coding upstream 476905 6394865 ~ 6395071 (-)
trnae-cuc_12 NA non-coding upstream 525784 6443744 ~ 6443815 (-)
cldn1 LOC108268314 other downstream 410157 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 817839 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 959175 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 1256316 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 1332369 4560788 ~ 4571827 (-)
LOC117597002 LOC107721237 other upstream 963422 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 2534650 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 2653536 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 2721508 8639468 ~ 9528825 (-)
G61478 NA other upstream 3065274 8983234 ~ 8984453 (-)

Expression


Co-expression Network