si:ch211-107p11.3 (LOC108267482)


Basic Information

Item Value
gene id si:ch211-107p11.3
gene name LOC108267482
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27381175 ~ 27385533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304154.1
TCTCTTTATTCGGGTTAATCGCGTTAGCCGGATAGTGTTAGCAAGATGTATAAATTCTGCCTCAATTAATCCTCAGTTGATTTCTGCCTCAGAAACAATGTAAAACTGTGAAAAGTCTGAGCGATGGCTAGAGAAAGAGCAGCTTTCTTCAGCCCGTTCGAGCAGGAGATAATCCTGAAGACTTTTGAGGAGTACAAAGCCATCATCACGGCGAAATGTAACACAGCTGCTGCAGCCAAATCCCGAGTGGAAGCCTGGCAGAAAATAGCCGACAGATTAAATGCcgcCAACCCCAACAACGTAAAGCGCACCTGGCAGCAGgtcaaaattaaatacaaaaacattgtaCAATGTGCGAACAGGAAACGGAAGCAGAAGTTTGGTGAAGGATTAGCGAGCAGCAGCTTTTCACCTGCCGAAGAGGTGGCACTTTGGCAGATCAGAGGGCGACCAGTGATAGATGGCACCATTTTGGGCCTTTCCTCCGAGCAGACTGGCATTAGTGTTGGGAGGCCGATAGCTACAGAGCCAGAAAGCTCCGCAAATCTTATACAAACAGTGCCAACCATTCTCGATTGCGCAGAAGAGCCCATTGAGCGCTCTGATTCAGAACATGATGAGAAGAACATTGTGGTGTGTCCTCATCCAGAAGAGGGGACTGAAGCGTACACAAGTCAAGAAGATCCTGGACCTTCTGGAGAGTTTTATTTGCAGCGAGATGAGGATGTGACGGCGCTGTATAAACGTTACCTCAGACAGGAAATCGCATACCGGcaactgaagatgaagaagctTGAGAAGGAGATCCAGCTGCTCGATAAACAGCTGCatgtgagttagAGTCAGGACACTGCTTAATATATGAATGGAGCGGTGTGGAGCAATCACCATGGCAGCTGTATCATGTAAGTCCCACCCCTCTAGTAAATTTTGTCTTCTAGTCATCATTTGAAAGTGCAAATGAAttctgaaacacatgaaaatgaTATTATTGATATTACTGAACAGAATTGTAAGCTTGATGATTAATTAAAGGAAATGAGTACACTAAATTACTACgactgtatttttaattttctttttatttttatgaattaaatattattttttttaatttcctgttcttttttttttaaattactatt
>XM_034304155.1
TCTCTTTATTCGGGTTAATCGCGTTAGCCGGATAGTGTTAGCAAGATGTATAAATTCTGCCTCAATTAATCCTCAGTTGATTTCTGCCTCAGAAACAATGTAAAACTGTGAAAAGTCTGAGCGATGGCTAGAGAAAGAGCAGCTTTCTTCAGCCCGTTCGAGCAGGAGATAATCCTGAAGACTTTTGAGGAGTACAAAGCCATCATCACGGCGAAATGTAACACAGCTGCTGCAGCCAAATCCCGAGTGGAAGCCTGGCAGAAAATAGCCGACAGATTAAATGCcgcCAACCCCAACAACGTAAAGCGCACCTGGCAGCAGgtcaaaattaaatacaaaaacattgtaCAATCGAACAGGAAACGGAAGCAGAAGTTTGGTGAAGGATTAGCGAGCAGCAGCTTTTCACCTGCCGAAGAGGTGGCACTTTGGCAGATCAGAGGGCGACCAGTGATAGATGGCACCATTTTGGGCCTTTCCTCCGAGCAGACTGGCATTAGTGTTGGGAGGCCGATAGCTACAGAGCCAGAAAGCTCCGCAAATCTTATACAAACAGTGCCAACCATTCTCGATTGCGCAGAAGAGCCCATTGAGCGCTCTGATTCAGAACATGATGAGAAGAACATTGTGGTGTGTCCTCATCCAGAAGAGGGGACTGAAGCGTACACAAGTCAAGAAGATCCTGGACCTTCTGGAGAGTTTTATTTGCAGCGAGATGAGGATGTGACGGCGCTGTATAAACGTTACCTCAGACAGGAAATCGCATACCGGcaactgaagatgaagaagctTGAGAAGGAGATCCAGCTGCTCGATAAACAGCTGCatgtgagttaggtcagtgaaCTGATTATTAGTAGGACCATCTGAAATGAACTGTGTGTCAGAGATACTAAAAATGTAGGTTCctacaggtaaaaaaaaaaaacaaaaactgataaCATTAGCTGAACAATTAAATAGATGCCACTGGCTCTCAAACTTGAATAAATTCTTCTAATTTTTTAACCATGAACTTTCGAAACTTTCAAAAAAAGAGCAGATGTAAACTCCATCATCTGTTGTGCCAGAGTCAGGACACTGCTTAATATATGAATGGAGCGGTGTGGAGCAATCACCATGGCAGCTGTATCATGTAAGTCCCACCCCTCTAGTAAATTTTGTCTTCTAGTCATCATTTGAAAGTGCAAATGAAttctgaaacacatgaaaatgaTATTATTGATATTACTGAACAGAATTGTAAGCTTGATGATTAATTAAAGGAAATGAGTACACTAAATTACTACgactgtatttttaattttctttttatttttatgaattaaatattattttttttaatttcctgttcttttttttttaaattactatt
>XM_034304156.1
TCTCTTTATTCGGGTTAATCGCGTTAGCCGGATAGTGTTAGCAAGATGTATAAATTCTGCCTCAATTAATCCTCAGTTGATTTCTGCCTCAGAAACAATGTAAAACTGTGAAAAGTCTGAGCGATGGCTAGAGAAAGAGCAGCTTTCTTCAGCCCGTTCGAGCAGGAGATAATCCTGAAGACTTTTGAGGAGTACAAAGCCATCATCACGGCGAAATGTAACACAGCTGCTGCAGCCAAATCCCGAGTGGAAGCCTGGCAGAAAATAGCCGACAGATTAAATGCcgcCAACCCCAACAACGTAAAGCGCACCTGGCAGCAGgtcaaaattaaatacaaaaacattgtaCAATGTGCGAACAGGAAACGGAAGCAGAAGTTTGGTGAAGGATTAGCGAGCAGCAGCTTTTCACCTGCCGAAGAGGTGGCACTTTGGCAGATCAGAGGGCGACCAGTGATAGATGGCACCATTTTGGGCCTTTCCTCCGAGCAGACTGGCATTAGTGTTGGGAGGCCGATAGCTACAGAGCCAGAAAGCTCCGCAAATCTTATACAAACAGTGCCAACCATTCTCGATTGCGCAGAAGAGCCCATTGAGCGCTCTGATTCAGAACATGATGAGAAGAACATTGTGGTGTGTCCTCATCCAGAAGAGGGGACTGAAGCGTACACAAGTCAAGAAGATCCTGGACCTTCTGGAGAGCGAGATGAGGATGTGACGGCGCTGTATAAACGTTACCTCAGACAGGAAATCGCATACCGGcaactgaagatgaagaagctTGAGAAGGAGATCCAGCTGCTCGATAAACAGCTGCatgtgagttaggtcagtgaaCTGATTATTAGTAGGACCATCTGAAATGAACTGTGTGTCAGAGATACTAAAAATGTAGGTTCctacaggtaaaaaaaaaaaacaaaaactgataaCATTAGCTGAACAATTAAATAGATGCCACTGGCTCTCAAACTTGAATAAATTCTTCTAATTTTTTAACCATGAACTTTCGAAACTTTCAAAAAAAGAGCAGATGTAAACTCCATCATCTGTTGTGCCAGAGTCAGGACACTGCTTAATATATGAATGGAGCGGTGTGGAGCAATCACCATGGCAGCTGTATCATGTAAGTCCCACCCCTCTAGTAAATTTTGTCTTCTAGTCATCATTTGAAAGTGCAAATGAAttctgaaacacatgaaaatgaTATTATTGATATTACTGAACAGAATTGTAAGCTTGATGATTAATTAAAGGAAATGAGTACACTAAATTACTACgactgtatttttaattttctttttatttttatgaattaaatattattttttttaatttcctgttcttttttttttaaattactatt

Function

NR:

description
uncharacterized protein LOC110510103 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304154.1 False 1145 mRNA 0.42 8 27381175 27385533
XM_034304155.1 True 1375 mRNA 0.41 7 27381175 27385533
XM_034304156.1 False 1366 mRNA 0.41 7 27381175 27385533

Neighbor

gene id symbol gene type direction distance location
LOC113539949 LOC108267483 coding downstream 70199 27287161 ~ 27310976 (-)
LOC113540236 LOC108267484 coding downstream 119274 27237944 ~ 27261901 (-)
LOC113540028 NA coding downstream 223160 27153499 ~ 27158015 (-)
cfap57 cfap57 coding downstream 237324 27108812 ~ 27143851 (-)
tmem125b LOC108267439 coding downstream 272764 27105494 ~ 27108411 (-)
insl5b LOC108268041 coding upstream 27923 27413456 ~ 27414564 (-)
cmpk cmpk1,cmpk,LOC107719256,LOC107681787,LOC107559368,LOC107671754 coding upstream 48159 27433692 ~ 27441494 (-)
slc35a3b LOC108267645 coding upstream 61722 27447255 ~ 27455713 (-)
acbd5b NA coding upstream 99244 27484777 ~ 27494927 (-)
anxa13l anxa13,anxa13l,LOC108267681,LOC103040954,LOC107727547 coding upstream 136157 27521690 ~ 27531090 (-)
G71955 NA non-coding downstream 94477 27286239 ~ 27286698 (-)
G71952 NA non-coding downstream 97518 27281049 ~ 27283657 (-)
G71951 NA non-coding downstream 101808 27277017 ~ 27279367 (-)
G71950 LOC108267486,LOC103364420,LOC106568718 non-coding downstream 106668 27274181 ~ 27274507 (-)
G71918 NA non-coding downstream 166776 27214152 ~ 27214399 (-)
G72073 NA non-coding upstream 16137 27401670 ~ 27402635 (-)
G72074 NA non-coding upstream 17604 27403137 ~ 27406819 (-)
G72094 NA non-coding upstream 59210 27444743 ~ 27445114 (-)
G72517 NA non-coding upstream 183711 27569244 ~ 27970795 (-)
G72607 NA non-coding upstream 527337 27912870 ~ 27958488 (-)
G71909 LOC108267490 other downstream 176989 27203783 ~ 27204186 (-)
G71832 NA other downstream 280317 27096602 ~ 27100858 (-)
G71596 NA other downstream 830145 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 1004767 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2795127 24565741 ~ 24586048 (-)
trnat-ugu_3 NA other upstream 9824 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 10618 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 29734 27415267 ~ 27432678 (-)
tsen15 tsen15 other upstream 89232 27474765 ~ 27483833 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other upstream 162219 27547752 ~ 27555987 (-)

Expression


Co-expression Network