LOC113524008


Basic Information

Item Value
gene id LOC113524008
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2844580 ~ 2853974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402482.2
attattattttaatattatgctTGTTTTTGGCTGTACTATATTTGTAAATTTTCAGCCCCACAAAAAAATAGGCCTTTGTTCTAACATTACCATCTGCACTAGTAACATTACTAGGTAAGTAATATAAGTAAAATAAGTAACattacttatatttatatataagtattatatatatattagtattattgTAGCCATAGAATGAACCTGATATGAACAGTAAGAGGATCATTGCTGtaagttatgtttttttttagctaccAGTTTACCAGCTCCACAGGAATACAGAGAGGAACAACAACACACAGTGACATCGCAAGTAACTTCTCGTGCAAAGCCACCAGAGGAATGCTGTGTCGAGTCCAGTTATTATGTAACTTTGGATGGTTTAAAAGCGTATAAAGAAACGAAAGCTAAATGCCGAAACCGTGGAGGCAGGGTCGACACTGAAGCTGGTTTTGTTGCATGTGAAGATCGTCATGCTGCATGGATGCGGTGGATAATGGAAAGGAATACGTGGTGTGAGAATGGAGGTTTTAAAATTTTAGTGCTGGCCTATATGGAGCACCAACAATGCTGCAGTGCTGTGTCTATTTCAAACGGACAATAGTACAAGTCATTACAGTTCCTAAAGAAGACATGAGCAATGCCTGTGACCCGGCCGGCTTCCACGTGACCTTTGAAATGACTCAACGCAATTGTGCAGAAAATCAACTTACACAGTTGAAGAGGCTGTTTGACAAAACTAAGATGTGCCATTAAAGGAGTATGGAAGCCCTGGTCCATTGGAAGGAGTGACTGAACTCATATAATTAACAATAGTTTTAGAAAATtgcaattaaacaattaaactcTGCCAAAATTGAAGTAATGCTTATTGGTCCCcatacaataatttttttaaaaatctgatttccCTGTAGATATTGAAGGTATTCCTTTCAACCTTTAAAACCCATCCTCTCATTTGAACCACACAATAGCTACGTTGCCAAAAAAAACTGCCTTTTATCACCTCcacaaaataatgcacttcCAGCATATTCTCAGTCTTAAAGATGCAGAAACTCTTGTCCATGGAGTTGTCATGTCTCATCTTGACTATTGCAATGCCCGTTTATTGGACTTCCATTAAAACCCATAATCATTACAATATATTCAAAATTCAGCAGCTAGAGTTCTCACTCGCTCCTCTAGGGCCACTCACATTACTCCTGTATTACATAGTCTGCACTGGCTACCTGTAGCTTCTaggattcagtacaaaaccttTCTTCTGACCTTTAAAGCCCTCCATAGCCTTGCGCCTCCTTATCTATCTGAGCTCCTTCATCCCTGAGGAGTTGCTTTGATAGCTCAGGCTCTCAGGTCCTCTGATTCTCGCCTACTCCTTGTACCATGTTTTCTCTTTTCCACCATGGGGTGGCAGATCATTTGCTGTCATGGCTCCAAAACTTTGGAATTCACTCCCTCAAAACCTCTGAAATGTTACCACTTTTTCGACTTTCAAATCACaacttaaaacacatttatttcttcagcACTTTGGCTCTTTTCATAACAGGTGAAATATTGATATCATTGCTCTTTGTTTGTTCTTCTCCTATGTCTATTAGTTTTGGAATGTAAAGTGTCCTTGAGCTGTGGAAaggtgttatataaataaaacatattatcattattattcatttattattaattacttaacAACTTAAACTGAGCTGAGTTGTTAAATTCTCTCTTCATTAATCAGTAATGTGCTCCTTTGTGTTTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402482.2 True 1774 lncRNA 0.37 6 2844580 2853974

Neighbor

gene id symbol gene type direction distance location
LOC113524014 NA coding downstream 3309 2835277 ~ 2841271 (-)
ccdc96 NA coding downstream 32939 2804495 ~ 2811641 (-)
trnag-ucc_14 NA coding downstream 42530 2801979 ~ 2802050 (-)
trnag-ucc_13 NA coding downstream 52636 2791873 ~ 2791944 (-)
trnar-ucu NA coding downstream 56807 2787702 ~ 2787773 (-)
ncapg2 ncapg2 coding upstream 606898 3460872 ~ 3486351 (-)
LOC117597049 ncapg2 coding upstream 672519 3526493 ~ 3534819 (-)
esyt2b esyt2 coding upstream 684341 3538315 ~ 3583012 (-)
LOC113525490 LOC108261092,LOC108261462 coding upstream 850800 3704774 ~ 3710547 (-)
LOC117597100 NA coding upstream 856597 3710571 ~ 3724565 (-)
G58704 grpel1 non-coding downstream 9949 2832678 ~ 2834631 (-)
G58703 NA non-coding downstream 13207 2831172 ~ 2831373 (-)
G58648 NA non-coding downstream 225787 2607752 ~ 2618793 (-)
G58650 NA non-coding downstream 227151 2611416 ~ 2617429 (-)
G58645 NA non-coding downstream 234328 2604477 ~ 2610252 (-)
G58809 NA non-coding upstream 175729 3029703 ~ 3084722 (-)
G58832 NA non-coding upstream 219199 3073173 ~ 3073765 (-)
G58933 NA non-coding upstream 295513 3149487 ~ 3149936 (-)
G58960 NA non-coding upstream 334350 3188324 ~ 3190127 (-)
G58965 NA non-coding upstream 375476 3229450 ~ 3230320 (-)
G58696 NA other downstream 27030 2814990 ~ 2817550 (-)
trnag-ucc_8 NA other downstream 128479 2716030 ~ 2716101 (-)
trnag-ucc_7 NA other downstream 134382 2710127 ~ 2710198 (-)
trnag-ucc_6 NA other downstream 138458 2706051 ~ 2706122 (-)
trnag-ucc_5 NA other downstream 163734 2680775 ~ 2680846 (-)
LOC113523993 LOC108261096,LOC108261462,LOC108261092 other upstream 254080 3108054 ~ 3115054 (-)
ptprn2 ptprn2 other upstream 369923 3223897 ~ 3457803 (-)
G59069 NA other upstream 732809 3586783 ~ 3590737 (-)
si:ch73-174h16.4 LOC108268225 other upstream 776014 3629988 ~ 3639208 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other upstream 1040618 3894592 ~ 3920131 (-)

Expression


Co-expression Network