LOC113527002


Basic Information

Item Value
gene id LOC113527002
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6802456 ~ 6805176 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402827.2
AGGAAAAGCTGAACTTCTAAACTctcttctcatattcatcttttgatctcaaaactGAATGTCTTCAGTCTACAGCAAAAGCAAATgaactggccttgccgttccagtagtttcggaggggactgtagcTGGTTTTTTAGAGTCATAATTCACAACTCTACGAACACCCAGGGATCCATAAAGCTTAGCCAAGGGGTCtggattttacattttgttacaatGGTGGAAATCCACCACTGCATTATTATGCTTTTGAGTTCTCTTGACTCCTCGGATCAATCCTGAGCCCTGGTTACTGCTTGTGTggggtttcacatgttctccccgagTTTGTGTTtgctcccacctcccaaaaataatGCCGAAATACTGTCTGAATCTCGGGGCAAACTTGATCTCAATACACAGCGAAGGTGAATATCAGTGGTTCAAGTCCTTTGTCCTTGCTGCAGACCCCAAGAACAATCCAACATGGATCGGCCTTAATAACTGTCAGAAGAACAACCACTGGTTGACCAACCACTGACCAAATTGATTTTCACCAAGTGGAGTCCAACTCAACCCAATTTTGTAGGTACAGAGTGCTGTGTGGTAAGTGAAAACTTCTTACATAGCTGTGTTAAGAATCTATCTTTTATAACTTCAGGGTTtggtgattcattttcaattaaaatgttaTGGCATGTTTAAATCCATATTCTTTGCTGTGTCTGCAGATGAGAAGGACTGGCTTGATGCTCCATGTGAGTGGACCTATCCCTTTGTTTGTGTCAAGAGGCCTAACTGAAATGCTCCCAGCCTCAACTTGGCAACTATAATACAATGTTGGATTTTTCTTCCTTGTCACTGATGGATTTACAAAAACCTCACTGTGGCAAGTTACCAtaatttcagca
>XR_004577961.1
GCTGTCTAGATGGCTGGGTGAAATTTGAAGGACGTTGCTTCAAGTATCAGGCCACCAGCATGGACTGGGCTTCTGCTGAGAAATACTGTCTGAATCTCGGGGCAAACTTGATCTCAATACACAGCGAAGGTGAATATCAGTGGTTCAAGTCCTTTGTCCTTGCTGCAGACCCCAAGAACAATCCAACATGGATCGGCCTTAATAACTGTCAGAAGAACAACCACTGGTTGACCAACCACTGACCAAATTGATTTTCACCAAGTGGAGTCCAACTCAACCCAATTTTGTAGGTACAGAGTGCTGTGTGGTAAGTGAAAACTTCTTACATAGCTGTGTTAAGAATCTATCTTTTATAACTTCAGGGTTtggtgattcattttcaattaaaatgttaTGGCATGTTTAAATCCATATTCTTTGCTGTGTCTGCAGATGAGAAGGACTGGCTTGATGCTCCATGTGAGTGGACCTATCCCTTTGTTTGTGTCAAGAGGCCTAACTGAAATGCTCCCAGCCTCAACTTGGCAACTATAATACAATGTTGGATTTTTCTTCCTTGTCACTGATGGATTTACAAAAACCTCACTGTGGCAAGTTACCAtaatttcagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402827.2 True 896 lncRNA 0.42 3 6803867 6805176
XR_004577961.1 False 612 lncRNA 0.42 3 6802456 6805176

Neighbor

gene id symbol gene type direction distance location
sharpin sharpin coding upstream 33720 6759401 ~ 6768736 (+)
gpaa1 gpaa1,LOC107671733 coding upstream 46656 6740573 ~ 6755800 (+)
LOC113547276 NA coding upstream 65257 6733584 ~ 6737199 (+)
LOC113547278 NA coding upstream 82740 6713807 ~ 6719716 (+)
LOC113547277 NA coding upstream 89155 6708381 ~ 6713301 (+)
LOC113526581 LOC108267314,LOC102787731 coding downstream 431894 7237070 ~ 7334917 (+)
LOC113526768 aqp4 coding downstream 591634 7396810 ~ 7405618 (+)
LOC113526462 kctd1,LOC108442723,LOC106534090 coding downstream 618384 7423560 ~ 7442254 (+)
ss18 ss18 coding downstream 677052 7482228 ~ 7530675 (+)
LOC113526517 znf521 coding downstream 738505 7543681 ~ 7675424 (+)
G60529 NA non-coding upstream 5347 6789220 ~ 6797109 (+)
LOC113547233 NA non-coding upstream 150610 6648782 ~ 6651846 (+)
LOC113547253 NA non-coding upstream 178805 6622836 ~ 6623651 (+)
trnar-ucu_1 NA non-coding upstream 371879 6430486 ~ 6430577 (+)
G60384 NA non-coding upstream 376112 6426119 ~ 6426344 (+)
G60536 NA non-coding downstream 4990 6810166 ~ 6812401 (+)
G60548 NA non-coding downstream 71855 6877031 ~ 6895222 (+)
G60554 NA non-coding downstream 81975 6887151 ~ 6906198 (+)
LOC117596999 NA non-coding downstream 141149 6946325 ~ 6951805 (+)
G60580 NA non-coding downstream 210911 7016087 ~ 7033495 (+)
LOC113547228 NA other upstream 98110 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 205855 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 658654 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 1206231 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 1410627 5388368 ~ 5391829 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1250880 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 1890176 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 1919369 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 2089294 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 2953284 9758460 ~ 9774049 (+)

Expression


Co-expression Network