LOC113539972


Basic Information

Item Value
gene id LOC113539972
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18499351 ~ 18514718 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403989.2
tttgtttatttaaatcatcTGTGCTGCCCTTTCTTGGTCATATATTTGACCAAGTTGTGGAGTCTCAGTTGTACATACCAGTCTTTTGATGCTGGTGCTCTAGTTGGGtaaccactatGTCATGGAGGATCTGGagactatcctgggaacactgggcatgaggtgggcaTACACCCTGGATGACAAGCTAGTCCATCATAAGATCTGCTGACATGCTGAAGCATCTGCCAACATGGTGAACTACCTTTTGACACAGAGGAGCTGAGAGTGGTTCAGAGAAATGAGAAGGCAGAGAAGGGAGTGTGCTTTGCTAAAAGAGAGAGCAGTGATGTATGGCTCACACCCAATCAACAAACAGCTGCAGCCAGGCTCTATTCTCTCCTGACCTCCCCTCACTTCTCTCCTGCCATCCTTACAACACAAAACTTGTGACTGTCAGAGTGCAAGGCTGAGATTTATGTTTTGAGATAGAGGggaaactggacagtttaaaCCACAGGTGTCAGAATCATTGGCCCATGTGCCGCAAGAACCACcgaaaaatgat
>XR_003403990.2
tttgtttatttaaatcatcTGTGCTGCCCTTTCTTGGTCATATATTTGACCAAGTTGTGGAGTCTCAGTTGTACATACCAGTCTTTTGATGCTGGTGCTCTAGTTGGGtaaccactatGTCATGGAGGATCTGGagactatcctgggaacactgggcatgaggtgggcaTACACCCTGGATGACAAGCTAGTCCATCATAAGtaaccgcTTACTGAAGTAACCAGTGGACACACACCAAGGGCAAATAAGCAGAGCCAATACACCtcccagcatgtttttggaaagtgtGAGGAAACATAAACAGGGAGAAGAtgagaaactctgcacagacagtaacctgaactcaggatcgaaccctggagctatgagacGGCAGTGCTACCCCCTGCACCACTGGCACCCTGGAGCTCTGAGatggcaacactacccactgttCCACCATGCTGCCTatcttattttaatgttttatacttTCAATATTTACTATATTGACATACTAACTcatcataaaatgtttataacacAGTATTAGCCTGTCTTATTTCTAGAAATGCACTATATTCTGATTAATAGCCTACTGATATAACCCATGCTAATGCACAAAAATCAGTGCAAAAAAAGATGCACTGATAATAAGTTAAAGAAATTAATTAGACAGTTATAGCTCTTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403989.2 False 547 lncRNA 0.46 3 18501531 18514718
XR_003403990.2 True 673 lncRNA 0.41 3 18499351 18514718

Neighbor

gene id symbol gene type direction distance location
adgra3 adgra3 coding downstream 76577 18387899 ~ 18422774 (-)
kcnip4 kcnip4,LOC100711851,LOC101482924,LOC102215477,LOC103143416,LOC107691846 coding downstream 117842 18243517 ~ 18381509 (-)
LOC113540092 LOC108267609 coding downstream 280439 18197287 ~ 18218912 (-)
myoz2a LOC108267175 coding downstream 303577 18187643 ~ 18195774 (-)
LOC113539796 LOC108268300 coding downstream 321581 18143307 ~ 18177770 (-)
ppargc1a ppargc1a,LOC108437096 coding upstream 18205 18532923 ~ 18564790 (-)
dhx15 dhx15,LOC107699613,LOC107691839 coding upstream 305581 18820299 ~ 18845420 (-)
ccdc149a ccdc149,LOC108268063,LOC100691566,LOC107671163,LOC101478871,LOC102778358 coding upstream 351796 18866514 ~ 18882947 (-)
LOC113540167 LOC108268090 coding upstream 371856 18886574 ~ 18896248 (-)
lgi2a lgi2,lgi2a,LOC107675415,LOC107691834,LOC107728668,LOC107601159,LOC107559946 coding upstream 384565 18899283 ~ 18907371 (-)
G66651 NA non-coding downstream 112361 18386561 ~ 18386990 (-)
G66387 NA non-coding downstream 478542 18015144 ~ 18020809 (-)
G66355 NA non-coding downstream 634468 17864010 ~ 17864883 (-)
G66349 NA non-coding downstream 686825 17799122 ~ 17812526 (-)
G66350 NA non-coding downstream 690337 17801666 ~ 17809014 (-)
G67016 NA non-coding upstream 432600 18947318 ~ 18947539 (-)
G67454 NA non-coding upstream 813630 19328348 ~ 19340529 (-)
G67453 NA non-coding upstream 818356 19333074 ~ 19339158 (-)
G67527 NA non-coding upstream 1090774 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 1101730 19616448 ~ 19629949 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 659436 17792226 ~ 17839915 (-)
G66281 NA other downstream 864483 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1055163 17439477 ~ 17444188 (-)
G66053 NA other downstream 1096887 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1893634 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 535432 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 1365250 19879968 ~ 19881640 (-)
G67587 NA other upstream 1373461 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 1404762 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 1447864 19962582 ~ 19965851 (-)

Expression


Co-expression Network