LOC113540179


Basic Information

Item Value
gene id LOC113540179
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27483820 ~ 27487711 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404003.2
AGTTTAAACAGCAACACGCCAAACACACGCGTATGTGTTATGGTGCTCGATCTAAAACACACTGGAAGGAAACGCGAGCCTGATTCCAAGGTTCCGCATTAAACTAAAGAGTTCTGATCATCTGCCTCATGGATGGCTTTAAAGCTTCATCTTCCTGAAAGTGAGAAAGCAGCCTGGGATGACAGATTGGACTGGTCCATGTGCCGCTGTGCAGAGGGGGGGAAGTGCTGCTCCCTGTGGTTTTCCATCCTGACTCACACcctcatcctctctctttccccctcgCCCCTCCGGCT
>XR_003404004.2
aaaacgCGAACAGTTTAAACAGCAACACGCCAAACACACGCGTATGTGTTATGGTGCTCGATCTAAAACACACTGGAAGGAAACGCGAGCCTGATTCCAAGGTTCCGCATTAAACTAAAGCAGAGTTCTGATCATCTGCCTCATGGATGGCTTTAAAGCTTCATCTTCCTGAAAGTGAGAAAGCAGCCTGGGATGACAGATTGGACTGGTCCATGTGCCGCTGTGCAGAGGGGGGGAAGTGCTGCTCCCTGTGGTTTTCCATCCTGACTCACACcctcatcctctctctttccccctcgCCCCTCCGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404003.2 False 296 lncRNA 0.51 3 27483831 27487711
XR_003404004.2 True 310 lncRNA 0.51 3 27483820 27487711

Neighbor

gene id symbol gene type direction distance location
zgc:55943 c7h1orf21,zgc:55943,LOC108430752,LOC103042176,LOC107709356,LOC107671715,LOC107559369,LOC107593773 coding upstream 6147 27468048 ~ 27477673 (+)
imp3 imp3,LOC107671714 coding upstream 17315 27460268 ~ 27466505 (+)
fam78ba LOC108267646,LOC108430701,LOC103149501,LOC101155797,LOC105925252,LOC103479089,LOC101481240 coding upstream 36572 27441509 ~ 27447248 (+)
bcl6ab LOC108268038 coding upstream 57126 27421285 ~ 27426694 (+)
tctex1d1 tctex1d1 coding upstream 71040 27410223 ~ 27412780 (+)
trnat-ugu_5 NA coding downstream 1542 27489253 ~ 27489325 (+)
abi1b abi1b,LOC108267643,LOC107671751,LOC107559371,LOC108430754,LOC107681778 coding downstream 8137 27495848 ~ 27508199 (+)
si:ch211-252f13.5 LOC108267682 coding downstream 22139 27509850 ~ 27517204 (+)
ap2m1a ap2m1,LOC108267679,LOC108430755 coding downstream 46965 27534676 ~ 27546129 (+)
dvl3a dvl3a,LOC108268006,LOC108430757,LOC107681796,LOC107671749,LOC107559372 coding downstream 74438 27562149 ~ 27582022 (+)
G72012 NA non-coding upstream 23623 27459670 ~ 27460197 (+)
G72005 NA non-coding upstream 54598 27428419 ~ 27429222 (+)
G71980 NA non-coding upstream 102748 27380848 ~ 27381072 (+)
G71977 NA non-coding upstream 112142 27371473 ~ 27371678 (+)
G71942 NA non-coding upstream 188456 27293356 ~ 27295364 (+)
G72118 NA non-coding downstream 65416 27553127 ~ 27555706 (+)
LOC113540592 NA non-coding downstream 68374 27556085 ~ 27559427 (+)
LOC113540695 NA non-coding downstream 68806 27556517 ~ 27556648 (+)
LOC113540696 NA non-coding downstream 70054 27557765 ~ 27557902 (+)
G72236 NA non-coding downstream 524033 28011744 ~ 28012459 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 77422 27384807 ~ 27406398 (+)
gng7 NA other upstream 602350 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 1107994 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 1191036 26288290 ~ 26292784 (+)
G71385 NA other upstream 1254629 26228764 ~ 26229191 (+)
insig1 insig1 other downstream 815140 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 828693 28316404 ~ 28338173 (+)
gng5 NA other downstream 1270834 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1305136 28792847 ~ 28797159 (+)
G72873 NA other downstream 1386645 28874356 ~ 28912104 (+)

Expression


Co-expression Network