LOC113540224


Basic Information

Item Value
gene id LOC113540224
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30836352 ~ 30838110 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404008.2
CGCTCCATGGCATCCTACCTAATTTGCCTAGAATTGAGAATATCTCAATctcagtgtggtcttctgctgttgtagcccgtcTTCTTCCAGcCTTAgtagtgtgaacacagggtaatgagcaaaccagaggtgacagtggtgtgGAAATCTCCCTCAGACGACATGAGCAAGAATCCTCGAACTCAATAAGGAGCCCATCTTCTTCCACAAAGAGTAccaagaacTGTTTTGCAGCAAATAAAGCAATCGGAACATTGTGAACTCTGAATGGGACGCAGCCGGAGGGCTTCTTACCGATGCCGATGACCTTTTCGATCTTAATGCAGGAGGCGTCGATCTCTTTGGCGAATTCGCGCACGGCCTGGTTGGGGTCCTCGTACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404008.2 True 381 lncRNA 0.49 3 30836352 30838110

Neighbor

gene id symbol gene type direction distance location
LOC113540512 NA coding downstream 111695 30721032 ~ 30724657 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding downstream 135307 30593706 ~ 30701045 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding downstream 613032 30212389 ~ 30223320 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 751491 30064050 ~ 30084861 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 779632 30050560 ~ 30056720 (-)
carmil3 carmil3,LOC108268291 coding upstream 452711 31290821 ~ 31344984 (-)
LOC113540523 LOC108267123 coding upstream 515792 31353902 ~ 31356972 (-)
LOC113540063 LOC108267709 coding upstream 522537 31360647 ~ 31364271 (-)
LOC113540461 LOC108267708,LOC107591395 coding upstream 541363 31379473 ~ 31502378 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding upstream 690260 31528370 ~ 31533258 (-)
G73977 NA non-coding downstream 65178 30770097 ~ 30771174 (-)
G73834 NA non-coding downstream 358118 30477403 ~ 30478234 (-)
G73684 NA non-coding downstream 638776 30195679 ~ 30197576 (-)
G73670 NA non-coding downstream 645231 30186896 ~ 30191121 (-)
LOC113540631 NA non-coding downstream 697480 30128728 ~ 30138872 (-)
G74047 NA non-coding upstream 192279 31030389 ~ 31031380 (-)
G74060 NA non-coding upstream 218375 31056485 ~ 31116436 (-)
G74255 NA non-coding upstream 387124 31225234 ~ 31226588 (-)
G74256 NA non-coding upstream 398303 31236413 ~ 31310909 (-)
G74417 NA non-coding upstream 728941 31567051 ~ 31650584 (-)
ccl20l LOC100304631 other downstream 60533 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 85384 30741527 ~ 30750968 (-)
G73619 blvra other downstream 813827 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 1105495 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 1260625 29564221 ~ 29575727 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 408950 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1032408 31870518 ~ 31871874 (-)
G74547 NA other upstream 1036199 31874309 ~ 31874827 (-)
G74550 NA other upstream 1041924 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 1044833 31882943 ~ 31883607 (-)

Expression


Co-expression Network