LOC113540239


Basic Information

Item Value
gene id LOC113540239
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26497033 ~ 26499267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404010.2
acctgaGAGGAACAAAAGAGTAACCTCAGAGGAATTGATAAGGAATTTGAGAAGAACCTAAGAGGAACCCGTGAGGAATCCGAAAGGAACCTGAGCAGAGCCACCTTCTCCTCATGCAGCGACATcatgcaaacatttaaaaagcatcTGTACCTGTTACTGACCTTTCAGGTCCAGATCGGATCCTCTCAAGCAGCGTGTTCTCCATGTCCGAATCTGATCTGCCCATCTGAGACATGTCCGCTTTCCCCCTCGGGTTCTCCAGGACCTGACAGACAAGAAGCTACACGTTACACTGCTGTGAGAATGTGAGCTGTTTAACTGCAAGAGCCTCGGCATGTTCCAGCTGCTGTATCTCCTTCATCTTCTCATCAAATCTCTTCATCTGTTCCAGGATCAAAACCTCcaaacacctaaacacacaaacacacacacacacacactaagtaaATTTCAgctgtgtatgtgagtgtggatgttttttcttgCAGTACACTGGCATTATattgcaccatcagaatgtaaATTGACTTATCGGACATTTTCcctcagtataaacaaatgaattattgctgcaagtctgttataagattagtcaggacactgttgggtttctgtgtgtagagtaccatgactctgtgtttagctgctggtgagcagggtgatATAaatttattgtggcagttgtaacATTTAATCCTAGTAGgctaggtttaaaaaaaaaaaaagaaatccttatgaaaaactgcaaattcttaaagccctgagtgtctattttcatatgagccattaaccactactatggaatgtgacatcacaaataatttCAATGCTGAACACAGGCACCCACAAAACAGGCAGAAATTCCATTgtttggcctctggtaaaaagagttaaagctgcagtgtgcgttctcagtgtgtgtttaaagctgcagtgtgcgttctcagtgtgtgtttaaagctgcagtgtgcgttctcagtgtgtgttcaaaGCTGAGGCGTgtgttctcagtgtgtgtttaaagctgcGGTGTATATTTAAATCTGCAGTGTGGGTTCTTGGTGTGTGCAATGAAGTCTCTCACAA
>XR_004577960.1
acctgaGAGGAACAAAAGAGTAACCTCAGAGGAATTGATAAGGAATTTGAGAAGAACCTAAGAGGAACCCGTGAGGAATCCGAAAGGAACCTGAGCAGAGCCACCTTCTCCTCATGCAGCGACATcatgcaaacatttaaaaagcatcTGTACCTGTTACTGACCTTTCAGGTCCAGATCGGATCCTCTCAAGCAGCGTGTTCTCCATGTCCGAATCTGATCTGCCCATCTGAGACATGTCCGCTTTCCCCCTCGGGTTCTCCAGGACCTGACAGACAAGAAGCTACACGTTACACTGCTTGTGAGCTGTTTAACTGCAAGAGCCTCGGCATGTTCCAGCTGCTGTATCTCCTTCATCTTCTCATCAAATCTCTTCATCTGTTCCAGGATCAAAACCTCcaaacacctaaacacacaaacacacacacacacacactaagtaaATTTCAgctgtgtatgtgagtgtggatgttttttcttgCAGTACACTGGCATTATattgcaccatcagaatgtaaATTGACTTATCGGACATTTTCcctcagtataaacaaatgaattattgctgcaagtctgttataagattagtcaggacactgttgggtttctgtgtgtagagtaccatgactctgtgtttagctgctggtgagcagggtgatATAaatttattgtggcagttgtaacATTTAATCCTAGTAGgctaggtttaaaaaaaaaaaaagaaatccttatgaaaaactgcaaattcttaaagccctgagtgtctattttcatatgagccattaaccactactatggaatgtgacatcacaaataatttCAATGCTGAACACAGGCACCCACAAAACAGGCAGAAATTCCATTgtttggcctctggtaaaaagagttaaagctgcagtgtgcgttctcagtgtgtgtttaaagctgcagtgtgcgttctcagtgtgtgtttaaagctgcagtgtgcgttctcagtgtgtgttcaaaGCTGAGGCGTgtgttctcagtgtgtgtttaaagctgcGGTGTATATTTAAATCTGCAGTGTGGGTTCTTGGTGTGTGCAATGAAGTCTCTCACAA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404010.2 True 1089 lncRNA 0.42 3 26497033 26499267
XR_004577960.1 False 1082 lncRNA 0.42 3 26497033 26499267

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-66d1.7 LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 coding downstream 44202 26446458 ~ 26452831 (-)
sdr39u1 sdr39u1 coding downstream 129058 26338735 ~ 26367975 (-)
parp2 parp2 coding downstream 167758 26319287 ~ 26329275 (-)
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding downstream 524028 25970634 ~ 25973005 (-)
tnn tnn coding downstream 564272 25904440 ~ 25932761 (-)
sppl2 sppl2b coding upstream 79527 26578794 ~ 26595990 (-)
ccnl1b ccnl1 coding upstream 173480 26672747 ~ 26678848 (-)
slitrk3b LOC108267197 coding upstream 208815 26708082 ~ 26712304 (-)
copa copa coding upstream 271315 26770582 ~ 26786518 (-)
pex19 pex19,LOC107591335,LOC107684402,LOC106569376 coding upstream 287820 26787087 ~ 26790914 (-)
G71589 NA non-coding downstream 32715 26464030 ~ 26464318 (-)
G71474 NA non-coding downstream 69659 26426258 ~ 26427374 (-)
G71470 NA non-coding downstream 81281 26407975 ~ 26415752 (-)
G71471 NA non-coding downstream 82539 26409175 ~ 26414494 (-)
G71469 NA non-coding downstream 84685 26402539 ~ 26412348 (-)
G71636 NA non-coding upstream 58962 26558229 ~ 26559138 (-)
G71693 NA non-coding upstream 162592 26661859 ~ 26663778 (-)
G71695 klhl6 non-coding upstream 166950 26666217 ~ 26666592 (-)
G71696 NA non-coding upstream 167796 26667063 ~ 26667730 (-)
G71697 NA non-coding upstream 169028 26668295 ~ 26668558 (-)
ltb4r2b NA other downstream 120625 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 1910985 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2192107 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 2965017 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 2979363 23516930 ~ 23517670 (-)
G71832 NA other upstream 597335 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 704516 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 896090 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 896884 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 916000 27415267 ~ 27432678 (-)

Expression


Co-expression Network