LOC113540697


Basic Information

Item Value
gene id LOC113540697
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29524509 ~ 29524687 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404071.2
TCTTCCATCCAAAAGAACTGTGCTGAAATTACAGAATCCAGGTCTCCTGGTTGATGTAATAATGCTAGCAGAGTGAAAGTATGGAAGAAGACGAACGTGCGCTGCGCCGAAAATGAAACGCGGTCGGACCGCTTTCTTAATGTCCAGTGGCCTTTGTTTCAAGGTTCAGTGCAACAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404071.2 True 179 ncRNA 0.46 1 29524509 29524687

Neighbor

gene id symbol gene type direction distance location
LOC113540698 NA coding downstream 597 29523723 ~ 29523912 (-)
LOC113540702 NA coding downstream 1043 29523394 ~ 29523466 (-)
kcnmb2 NA coding downstream 58489 29461041 ~ 29466020 (-)
mfsd8l2 LOC108267997,LOC108437504 coding downstream 71716 29442115 ~ 29452793 (-)
pcolce2a LOC108268019 coding downstream 152983 29359500 ~ 29371526 (-)
LOC113540703 NA coding upstream 302 29524989 ~ 29525061 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding upstream 52011 29576698 ~ 29592827 (-)
LOC113539879 LOC108267234 coding upstream 105283 29629970 ~ 29666855 (-)
si:ch211-13f8.2 LOC108268058,LOC108437498 coding upstream 156557 29681244 ~ 29692555 (-)
si:ch211-13f8.1 LOC108267891 coding upstream 168691 29693378 ~ 29705682 (-)
G73327 NA non-coding downstream 204175 29273589 ~ 29320334 (-)
G73319 NA non-coding downstream 306351 29216270 ~ 29218158 (-)
G73318 LOC107599861 non-coding downstream 309458 29213553 ~ 29215051 (-)
G73247 NA non-coding downstream 328342 29128055 ~ 29196167 (-)
G73423 NA non-coding upstream 15408 29540095 ~ 29540356 (-)
G73439 NA non-coding upstream 82914 29607601 ~ 29607805 (-)
G73452 LOC108268059 non-coding upstream 146500 29671187 ~ 29674270 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding upstream 186399 29711086 ~ 29712194 (-)
G73458 LOC108267889 non-coding upstream 188206 29712893 ~ 29713446 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 352588 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 639544 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 732680 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 872084 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 1287704 28236724 ~ 28236805 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 39534 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 199901 29724588 ~ 29730857 (-)
G73619 blvra other upstream 494819 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1216840 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1248762 30773449 ~ 30775819 (-)

Expression


Co-expression Network