LOC113540698


Basic Information

Item Value
gene id LOC113540698
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29523723 ~ 29523912 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404072.2
cccTTCTTTACCAAAAGCGCCATGCCAAAATCAGCAGGTCTGAGCTTTTACCGGTTTAGTCCTGCTGGTCATGCTAGTATGGTACATCTCAAAGAAGGGAGAGCAAAAGCCGCAGCCTCGGAAATGAGACCAGGAGGGACCTCTTTCTTAATGTCCCGTGTCCTGTGTCTCAAGATTCTGCGCTACATGT

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404072.2 True 190 ncRNA 0.49 1 29523723 29523912

Neighbor

gene id symbol gene type direction distance location
LOC113540702 NA coding downstream 257 29523394 ~ 29523466 (-)
kcnmb2 NA coding downstream 57703 29461041 ~ 29466020 (-)
mfsd8l2 LOC108267997,LOC108437504 coding downstream 70930 29442115 ~ 29452793 (-)
pcolce2a LOC108268019 coding downstream 152197 29359500 ~ 29371526 (-)
chst2a LOC108268021 coding downstream 187020 29333119 ~ 29336703 (-)
LOC113540697 NA coding upstream 597 29524509 ~ 29524687 (-)
LOC113540703 NA coding upstream 1077 29524989 ~ 29525061 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding upstream 52786 29576698 ~ 29592827 (-)
LOC113539879 LOC108267234 coding upstream 106058 29629970 ~ 29666855 (-)
si:ch211-13f8.2 LOC108268058,LOC108437498 coding upstream 157332 29681244 ~ 29692555 (-)
G73327 NA non-coding downstream 203389 29273589 ~ 29320334 (-)
G73319 NA non-coding downstream 305565 29216270 ~ 29218158 (-)
G73318 LOC107599861 non-coding downstream 308672 29213553 ~ 29215051 (-)
G73247 NA non-coding downstream 327556 29128055 ~ 29196167 (-)
G73423 NA non-coding upstream 16183 29540095 ~ 29540356 (-)
G73439 NA non-coding upstream 83689 29607601 ~ 29607805 (-)
G73452 LOC108268059 non-coding upstream 147275 29671187 ~ 29674270 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding upstream 187174 29711086 ~ 29712194 (-)
G73458 LOC108267889 non-coding upstream 188981 29712893 ~ 29713446 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 351802 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 638758 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 731894 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 871298 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 1286918 28236724 ~ 28236805 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 40309 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 200676 29724588 ~ 29730857 (-)
G73619 blvra other upstream 495594 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1217615 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1249537 30773449 ~ 30775819 (-)

Expression


Co-expression Network