LOC113540700


Basic Information

Item Value
gene id LOC113540700
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10041567 ~ 10041779 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404074.2
AAGACTATACTTTCAGGGATCATTTCTATAGTCTCTAACTaggaaatgtgatttgaaaGCGTTACGTCTCTCTAATCACGATGATGAGTTTTGATGTATTTCTCTGAGCGTGAATCGGATTTTAGCTAGTGATTTTATCATGAGCTTTAGTCATTGATGAACGTTCTCTGTTTCTTATGGAACATGAGAGGAGAAGTACATGATCAGAGTGAT

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404074.2 True 213 lncRNA 0.36 1 10041567 10041779

Neighbor

gene id symbol gene type direction distance location
intu intu coding downstream 17790 9997315 ~ 10023777 (-)
aadat aadat,LOC102781018 coding downstream 48700 9980997 ~ 9992867 (-)
mfap3l mfap3l coding downstream 60901 9972383 ~ 9980666 (-)
pfdn2 pfdn2,LOC107745204 coding downstream 121776 9914234 ~ 9919791 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding downstream 129795 9907559 ~ 9911772 (-)
trmt10b trmt10b coding upstream 4793 10046572 ~ 10053214 (-)
LOC113540363 NA coding upstream 51968 10093747 ~ 10095116 (-)
LOC113540311 LOC108267981 coding upstream 54000 10095779 ~ 10106529 (-)
LOC117597105 LOC108267929 coding upstream 69383 10111162 ~ 10143429 (-)
LOC113538503 LOC108261535 coding upstream 126138 10167917 ~ 10189928 (-)
LOC117597227 NA non-coding downstream 873 10040482 ~ 10040694 (-)
LOC113540709 NA non-coding downstream 1980 10039380 ~ 10039587 (-)
LOC113540720 NA non-coding downstream 2801 10038554 ~ 10038766 (-)
LOC117596979 NA non-coding downstream 3584 10026874 ~ 10037983 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding upstream 160452 10202231 ~ 10211232 (-)
G62108 LOC108267978,LOC108411458 non-coding upstream 322233 10364012 ~ 10364892 (-)
G62109 LOC108267978 non-coding upstream 326542 10368321 ~ 10370563 (-)
G62125 NA non-coding upstream 432991 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 455742 10497521 ~ 10499087 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 236249 9776278 ~ 9805318 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 512742 8639468 ~ 9528825 (-)
cxcl19 LOC108267987 other upstream 28627 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 36909 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 444889 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 448569 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 449811 10491590 ~ 10491663 (-)

Expression


Co-expression Network