LOC113540711


Basic Information

Item Value
gene id LOC113540711
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9516451 ~ 9516658 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404085.2
AGGACTGTACTTTCAgggatcatttctatagtgtcTAACTaggaaatgtgatttgaaaGTGTTGTGTCTCTCTAACCACAATGATGAGTTTTGATGCACTCTTCTGAACATGAATCAGGTTTTGGCTAATGATTCTTTCATGAGTTTTGACCTTTGATgattgttctctttttttttaaagagaggaAGAGTGCATGATCTGAGTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404085.2 True 208 lncRNA 0.36 1 9516451 9516658

Neighbor

gene id symbol gene type direction distance location
LOC113539885 LOC100379168 coding downstream 31850 9474177 ~ 9484601 (-)
dusp19b dus19 coding downstream 78484 9435134 ~ 9437967 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding downstream 103538 9391003 ~ 9412913 (-)
LOC113540032 NA coding downstream 126970 9383985 ~ 9389481 (-)
LOC117597149 NA coding downstream 139439 9368722 ~ 9377012 (-)
zgc:101810 zgc:101810,LOC108267909,LOC108440263,LOC103038739,LOC107747924,LOC107692827,LOC107377040,LOC105026763 coding upstream 366053 9882711 ~ 9889757 (-)
six7 LOC108267910,LOC108440264,LOC105902948,LOC107567605,LOC105026762,LOC102308987,LOC101481621,LOC107748082,LOC107553799,LOC105933590,LOC103360578 coding upstream 375693 9892351 ~ 9896258 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding upstream 390901 9907559 ~ 9911772 (-)
pfdn2 pfdn2,LOC107745204 coding upstream 397576 9914234 ~ 9919791 (-)
mfap3l mfap3l coding upstream 455725 9972383 ~ 9980666 (-)
LOC113540724 NA non-coding downstream 260 9515981 ~ 9516191 (-)
LOC113540716 NA non-coding downstream 1371 9514869 ~ 9515080 (-)
LOC113540704 NA non-coding downstream 3570 9512675 ~ 9512881 (-)
LOC117597241 NA non-coding downstream 4151 9512088 ~ 9512300 (-)
LOC113540730 NA non-coding downstream 6488 9509752 ~ 9509963 (-)
LOC117597236 NA non-coding upstream 16182 9532840 ~ 9533044 (-)
LOC117597237 NA non-coding upstream 58289 9574947 ~ 9575160 (-)
LOC113540714 NA non-coding upstream 61640 9578298 ~ 9578510 (-)
LOC113540721 NA non-coding upstream 63366 9580024 ~ 9580241 (-)
LOC113540708 NA non-coding upstream 64152 9580810 ~ 9581016 (-)
G61537 NA other downstream 177706 9337826 ~ 9338745 (-)
LOC113540087 LOC108267275 other downstream 189020 9314849 ~ 9327431 (-)
G61478 NA other downstream 531998 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 920826 8571496 ~ 8595625 (-)
LOC113526822 LOC108268278 other downstream 964596 8452610 ~ 8551855 (-)
G61900 NA other upstream 89069 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 259620 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 553748 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 562030 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 970010 10486668 ~ 10486741 (-)

Expression


Co-expression Network