LOC113540738


Basic Information

Item Value
gene id LOC113540738
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27113148 ~ 27113254 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404108.2
GTGATAGCGTTAGCAGCACATATACTAATATGGGTACAATACAGAGAAGATTAGCATGGCCCCGGTGCAAGGATGACATGCAAAATCGTGACGCGTTACCATGGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404108.2 True 107 ncRNA 0.46 1 27113148 27113254

Neighbor

gene id symbol gene type direction distance location
LOC113540681 NA coding upstream 74789 27030740 ~ 27038359 (+)
LOC113540685 LOC108267717 coding upstream 99503 26983741 ~ 27013645 (+)
LOC113539948 NA coding upstream 161291 26941327 ~ 26951857 (+)
gpr160 gpr160 coding upstream 210782 26900847 ~ 26902366 (+)
zgc:101744 LOC108267447,LOC107738186,LOC107684405,LOC107591448,LOC107659369,LOC108411183 coding upstream 247633 26857531 ~ 26865515 (+)
ebna1bp2 ebna1bp2 coding downstream 30810 27144064 ~ 27151124 (+)
LOC113540389 LOC108267490 coding downstream 60807 27174061 ~ 27237097 (+)
LOC113539951 LOC108267487 coding downstream 152316 27265570 ~ 27270794 (+)
LOC113539841 LOC108267486,LOC107719261,LOC107593886,LOC107671769,LOC107559363,LOC107754779 coding downstream 160918 27274172 ~ 27286654 (+)
LOC113540484 leprot,LOC108430744 coding downstream 199823 27313077 ~ 27318012 (+)
G71827 NA non-coding upstream 39072 27073841 ~ 27074076 (+)
G71819 NA non-coding upstream 70236 27042703 ~ 27042912 (+)
G71557 NA non-coding upstream 256543 26808057 ~ 26856605 (+)
G71550 NA non-coding upstream 326588 26784572 ~ 26786560 (+)
G71519 NA non-coding upstream 445020 26667762 ~ 26668128 (+)
G71864 NA non-coding downstream 82747 27196001 ~ 27196373 (+)
G71868 NA non-coding downstream 104098 27217352 ~ 27217839 (+)
G71869 NA non-coding downstream 104973 27218227 ~ 27218455 (+)
G71874 NA non-coding downstream 116608 27229862 ~ 27230100 (+)
G71941 NA non-coding downstream 170806 27284060 ~ 27284463 (+)
gng7 NA other upstream 231678 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 737322 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 820364 26288290 ~ 26292784 (+)
G71385 NA other upstream 883957 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 889110 26216064 ~ 26224038 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 271553 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1189597 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1203150 28316404 ~ 28338173 (+)
gng5 NA other downstream 1645291 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1679593 28792847 ~ 28797159 (+)

Expression


Co-expression Network