LOC113540749


Basic Information

Item Value
gene id LOC113540749
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19016823 ~ 19016953 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404117.1
tgggaaaCTGATACATGGGCAGTTCTGAACTATGCACTGTTCATCACAAGCTTTCCCAAGATAATACTTGCTTTCTGATGACCGGGGCGAATTGAGAGAAATCGCAACGGACAGATACGGAGCAGACAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404117.1 True 131 ncRNA 0.47 1 19016823 19016953

Neighbor

gene id symbol gene type direction distance location
dennd4c dennd4c coding downstream 2518 18964454 ~ 19014305 (-)
acer2 acer2,LOC107601172,LOC107691831,LOC107675399,LOC107559953 coding downstream 53074 18954712 ~ 18963749 (-)
LOC113540271 LOC108267333,LOC108436197,LOC103041383,LOC107752978,LOC107691867,LOC106577738 coding downstream 69058 18943964 ~ 18947765 (-)
aco1 aco1,LOC107601170,LOC107559949,LOC107675411 coding downstream 73639 18926146 ~ 18943184 (-)
sepsecs sepsecs,LOC107559948,LOC107601169,LOC107675416 coding downstream 91300 18910752 ~ 18925523 (-)
LOC113540750 NA coding upstream 317 19017270 ~ 19017400 (-)
plin2 plin2,LOC100304704,LOC100526709 coding upstream 8180 19025133 ~ 19028898 (-)
larp7 larp7 coding upstream 17539 19034492 ~ 19042269 (-)
LOC113540506 LOC108267151 coding upstream 27869 19044822 ~ 19049448 (-)
LOC113540739 NA coding upstream 205786 19222739 ~ 19222843 (-)
G67016 NA non-coding downstream 69284 18947318 ~ 18947539 (-)
LOC113539972 NA non-coding downstream 502105 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 629833 18386561 ~ 18386990 (-)
G66387 NA non-coding downstream 996014 18015144 ~ 18020809 (-)
G66355 NA non-coding downstream 1151940 17864010 ~ 17864883 (-)
G67454 NA non-coding upstream 311395 19328348 ~ 19340529 (-)
G67453 NA non-coding upstream 316121 19333074 ~ 19339158 (-)
G67527 NA non-coding upstream 588539 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 599495 19616448 ~ 19629949 (-)
G67535 NA non-coding upstream 752404 19769357 ~ 19824919 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1176908 17792226 ~ 17839915 (-)
G66281 NA other downstream 1381955 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1572635 17439477 ~ 17444188 (-)
G66053 NA other downstream 1614359 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 2411106 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 33197 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 863015 19879968 ~ 19881640 (-)
G67587 NA other upstream 871226 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 902527 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 945629 19962582 ~ 19965851 (-)

Expression


Co-expression Network