LOC113540753


Basic Information

Item Value
gene id LOC113540753
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11208733 ~ 11208833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404121.1
TTCCTATGATGAGTTTGCCATGCTAATACCGATGCGCCAGACCAACTGGGCGTAAGTGAGTTCAACTCAACTTCTCACACTCACAGTGTGCTCTGAAGGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404121.1 True 101 ncRNA 0.49 1 11208733 11208833

Neighbor

gene id symbol gene type direction distance location
lrp10 lrp10 coding downstream 51621 11146952 ~ 11157112 (-)
LOC113539898 LOC108267947 coding downstream 61859 11137415 ~ 11146874 (-)
LOC113540343 NA coding downstream 185092 11022870 ~ 11023641 (-)
haus3 haus3 coding downstream 454165 10747772 ~ 10754568 (-)
nelfa nelfa,LOC107562310,LOC107741467,LOC107753914,LOC107691925,LOC107588166 coding downstream 550592 10646651 ~ 10658141 (-)
LOC113540751 NA coding upstream 4001 11212834 ~ 11212934 (-)
LOC113540752 NA coding upstream 5489 11214322 ~ 11214422 (-)
efs LOC108267924 coding upstream 8953 11217786 ~ 11231197 (-)
LOC113540349 LOC108267946 coding upstream 24215 11233048 ~ 11239469 (-)
tinf2 LOC108267930 coding upstream 35938 11244771 ~ 11263066 (-)
LOC117596980 NA non-coding downstream 125721 11080531 ~ 11083012 (-)
G62504 LOC108267929,LOC108261535 non-coding downstream 134030 11042345 ~ 11074703 (-)
G62469 LOC108267929 non-coding downstream 254989 10926840 ~ 10953744 (-)
G62183 NA non-coding downstream 636373 10572155 ~ 10572360 (-)
G62167 NA non-coding downstream 674311 10534073 ~ 10534422 (-)
G62743 NA non-coding upstream 103581 11312414 ~ 11345959 (-)
G62754 NA non-coding upstream 112537 11321370 ~ 11361429 (-)
LOC117596984 NA non-coding upstream 141864 11350697 ~ 11358554 (-)
G62735 LOC108261673,LOC108267931,LOC108267938,LOC108267738,LOC108267739,LOC108267740,LOC108267935,LOC108267932 non-coding upstream 156422 11365255 ~ 11366181 (-)
G62734 LOC108267738,LOC108267739,LOC108267931,LOC108267241,LOC108267938,LOC108261673,LOC108267740,LOC108267935 non-coding upstream 232284 11441117 ~ 11471047 (-)
mrpl52 mrpl52 other downstream 26364 11177685 ~ 11182369 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other downstream 298522 10907025 ~ 10910211 (-)
svep1 svep1 other downstream 345235 10775252 ~ 10863498 (-)
poln poln,LOC107563414 other downstream 461087 10693257 ~ 10747646 (-)
gba2 gba2,LOC107749818,LOC107741462 other downstream 646727 10538245 ~ 10562006 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other upstream 57551 11266384 ~ 11360044 (-)
LOC113538166 LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927 other upstream 77616 11286449 ~ 11313616 (-)
si:dkey-183c6.7 LOC108267942 other upstream 193194 11402027 ~ 11415897 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other upstream 315993 11524826 ~ 11535243 (-)
htr2cl1 LOC108267122,LOC108434824 other upstream 653792 11862625 ~ 11966903 (-)

Expression


Co-expression Network