Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596962 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32647281 ~ 32648098 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577912.1 | True | 670 | lncRNA | 0.38 | 2 | 32647281 | 32648098 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nmnat2 | nmnat2,LOC107658365,LOC107563562 | coding | downstream | 919729 | 31710064 ~ 31727552 (-) |
| LOC113540064 | NA | coding | downstream | 1102647 | 31538539 ~ 31544634 (-) |
| psmb5 | psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 | coding | downstream | 1114023 | 31528370 ~ 31533258 (-) |
| LOC113540461 | LOC108267708,LOC107591395 | coding | downstream | 1144903 | 31379473 ~ 31502378 (-) |
| LOC113540063 | LOC108267709 | coding | downstream | 1283010 | 31360647 ~ 31364271 (-) |
| LOC117597140 | NA | coding | upstream | 175460 | 32823558 ~ 32825567 (-) |
| LOC117596924 | NA | coding | upstream | 186941 | 32835039 ~ 32835722 (-) |
| LOC117596934 | NA | coding | upstream | 196003 | 32844101 ~ 32845270 (-) |
| LOC117597141 | NA | coding | upstream | 324687 | 32972785 ~ 32977700 (-) |
| LOC117597142 | NA | coding | upstream | 348258 | 32996356 ~ 32996892 (-) |
| G74640 | NA | non-coding | downstream | 19285 | 32627561 ~ 32627996 (-) |
| LOC117596963 | NA | non-coding | downstream | 444427 | 32202081 ~ 32202854 (-) |
| G74622 | NA | non-coding | downstream | 446477 | 32200365 ~ 32200804 (-) |
| G74619 | NA | non-coding | downstream | 482867 | 32164054 ~ 32164414 (-) |
| LOC117595679 | NA | non-coding | downstream | 520819 | 32125572 ~ 32126462 (-) |
| G74646 | NA | non-coding | upstream | 3689 | 32651787 ~ 32652241 (-) |
| LOC117597135 | NA | non-coding | upstream | 10263 | 32658361 ~ 32658922 (-) |
| G74647 | NA | non-coding | upstream | 11434 | 32659532 ~ 32659961 (-) |
| LOC117596968 | NA | non-coding | upstream | 119490 | 32767588 ~ 32769282 (-) |
| LOC117596927 | NA | non-coding | upstream | 128868 | 32776966 ~ 32777798 (-) |
| G74644 | NA | other | downstream | 2747 | 32644024 ~ 32644534 (-) |
| LOC117596950 | NA | other | downstream | 13570 | 32633213 ~ 32633711 (-) |
| LOC117596946 | NA | other | downstream | 443376 | 32203394 ~ 32203905 (-) |
| LOC117597125 | NA | other | downstream | 469157 | 32175807 ~ 32178124 (-) |
| LOC117596948 | NA | other | downstream | 471871 | 32174918 ~ 32175410 (-) |
| LOC117596929 | NA | other | upstream | 13794 | 32661892 ~ 32665420 (-) |
| G74703 | NA | other | upstream | 217848 | 32865946 ~ 32868466 (-) |
| LOC117597171 | NA | other | upstream | 298036 | 32946134 ~ 32947158 (-) |
| LOC117597170 | NA | other | upstream | 301736 | 32949834 ~ 32950494 (-) |
| LOC117597177 | NA | other | upstream | 322906 | 32971004 ~ 32971513 (-) |
