Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596963 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32202081 ~ 32202854 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577913.1 | True | 381 | lncRNA | 0.47 | 4 | 32202081 | 32202854 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nmnat2 | nmnat2,LOC107658365,LOC107563562 | coding | downstream | 474529 | 31710064 ~ 31727552 (-) |
| LOC113540064 | NA | coding | downstream | 657447 | 31538539 ~ 31544634 (-) |
| psmb5 | psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 | coding | downstream | 668823 | 31528370 ~ 31533258 (-) |
| LOC113540461 | LOC108267708,LOC107591395 | coding | downstream | 699703 | 31379473 ~ 31502378 (-) |
| LOC113540063 | LOC108267709 | coding | downstream | 837810 | 31360647 ~ 31364271 (-) |
| LOC117597140 | NA | coding | upstream | 620704 | 32823558 ~ 32825567 (-) |
| LOC117596924 | NA | coding | upstream | 632185 | 32835039 ~ 32835722 (-) |
| LOC117596934 | NA | coding | upstream | 641247 | 32844101 ~ 32845270 (-) |
| LOC117597141 | NA | coding | upstream | 769931 | 32972785 ~ 32977700 (-) |
| LOC117597142 | NA | coding | upstream | 793502 | 32996356 ~ 32996892 (-) |
| G74622 | NA | non-coding | downstream | 1277 | 32200365 ~ 32200804 (-) |
| G74619 | NA | non-coding | downstream | 37667 | 32164054 ~ 32164414 (-) |
| LOC117595679 | NA | non-coding | downstream | 75619 | 32125572 ~ 32126462 (-) |
| LOC113540655 | NA | non-coding | downstream | 89670 | 32111586 ~ 32112411 (-) |
| LOC117597180 | NA | non-coding | downstream | 270018 | 31931305 ~ 31932063 (-) |
| G74640 | NA | non-coding | upstream | 424707 | 32627561 ~ 32627996 (-) |
| LOC117596962 | NA | non-coding | upstream | 444427 | 32647281 ~ 32648098 (-) |
| G74646 | NA | non-coding | upstream | 448933 | 32651787 ~ 32652241 (-) |
| LOC117597135 | NA | non-coding | upstream | 455507 | 32658361 ~ 32658922 (-) |
| G74647 | NA | non-coding | upstream | 456678 | 32659532 ~ 32659961 (-) |
| LOC117597125 | NA | other | downstream | 23957 | 32175807 ~ 32178124 (-) |
| LOC117596948 | NA | other | downstream | 26671 | 32174918 ~ 32175410 (-) |
| LOC113540132 | NA | other | downstream | 32845 | 32168582 ~ 32169236 (-) |
| G74615 | NA | other | downstream | 52284 | 32149195 ~ 32149797 (-) |
| LOC117596956 | NA | other | downstream | 57138 | 32144459 ~ 32144943 (-) |
| LOC117596946 | NA | other | upstream | 540 | 32203394 ~ 32203905 (-) |
| LOC117596950 | NA | other | upstream | 430359 | 32633213 ~ 32633711 (-) |
| G74644 | NA | other | upstream | 441170 | 32644024 ~ 32644534 (-) |
| LOC117596929 | NA | other | upstream | 459038 | 32661892 ~ 32665420 (-) |
| G74703 | NA | other | upstream | 663092 | 32865946 ~ 32868466 (-) |
