Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113540655 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32111586 ~ 32112411 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577914.1 | True | 432 | lncRNA | 0.47 | 4 | 32111586 | 32112411 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nmnat2 | nmnat2,LOC107658365,LOC107563562 | coding | downstream | 384034 | 31710064 ~ 31727552 (-) |
| LOC113540064 | NA | coding | downstream | 566952 | 31538539 ~ 31544634 (-) |
| psmb5 | psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 | coding | downstream | 578328 | 31528370 ~ 31533258 (-) |
| LOC113540461 | LOC108267708,LOC107591395 | coding | downstream | 609208 | 31379473 ~ 31502378 (-) |
| LOC113540063 | LOC108267709 | coding | downstream | 747315 | 31360647 ~ 31364271 (-) |
| LOC117597140 | NA | coding | upstream | 711147 | 32823558 ~ 32825567 (-) |
| LOC117596924 | NA | coding | upstream | 722628 | 32835039 ~ 32835722 (-) |
| LOC117596934 | NA | coding | upstream | 731690 | 32844101 ~ 32845270 (-) |
| LOC117597141 | NA | coding | upstream | 860374 | 32972785 ~ 32977700 (-) |
| LOC117597142 | NA | coding | upstream | 883945 | 32996356 ~ 32996892 (-) |
| LOC117597180 | NA | non-coding | downstream | 179523 | 31931305 ~ 31932063 (-) |
| LOC117597178 | NA | non-coding | downstream | 201672 | 31908648 ~ 31909914 (-) |
| G74553 | NA | non-coding | downstream | 210029 | 31893851 ~ 31901557 (-) |
| LOC113540068 | NA | non-coding | downstream | 241578 | 31867082 ~ 31870008 (-) |
| G74457 | NA | non-coding | downstream | 355282 | 31753121 ~ 31756304 (-) |
| LOC117595679 | NA | non-coding | upstream | 13161 | 32125572 ~ 32126462 (-) |
| G74619 | NA | non-coding | upstream | 51643 | 32164054 ~ 32164414 (-) |
| G74622 | NA | non-coding | upstream | 87954 | 32200365 ~ 32200804 (-) |
| LOC117596963 | NA | non-coding | upstream | 89670 | 32202081 ~ 32202854 (-) |
| G74640 | NA | non-coding | upstream | 515150 | 32627561 ~ 32627996 (-) |
| G74607 | NA | other | downstream | 44249 | 32066812 ~ 32067337 (-) |
| LOC117597121 | NA | other | downstream | 200612 | 31905626 ~ 31910974 (-) |
| LOC117597011 | NA | other | downstream | 227979 | 31882943 ~ 31883607 (-) |
| G74550 | NA | other | downstream | 231030 | 31880034 ~ 31880556 (-) |
| G74547 | NA | other | downstream | 236759 | 31874309 ~ 31874827 (-) |
| LOC117596961 | NA | other | upstream | 19540 | 32131951 ~ 32132467 (-) |
| LOC117596956 | NA | other | upstream | 32048 | 32144459 ~ 32144943 (-) |
| G74615 | NA | other | upstream | 36784 | 32149195 ~ 32149797 (-) |
| LOC113540132 | NA | other | upstream | 56171 | 32168582 ~ 32169236 (-) |
| LOC117596948 | NA | other | upstream | 62507 | 32174918 ~ 32175410 (-) |
