LOC117596966


Basic Information

Item Value
gene id LOC117596966
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32871746 ~ 32873023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577918.1
CATCCATTCGTTAAGGCATGTTTGCTCCACGGAGTTTCCTTAAAATCAGacagtttcctccaggttctctggtttcctcccacctcccattaacatgcagGATCCTGCAGCTGATCCAGTTGAGCTGGAATGAGGCAAGTCTTCTGGGGTTGTGGAAAGCCAGAGCACTTGACTACGCCTAAGTAAAAGTGGGAGGAGCTAGATGTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGACAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCAACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGCATTATTATATCTACAGAAACTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCACCAGACTGCGTAAAAATGAGAGGAAAGTAGATCTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATGGAGCCCACAGtaacaggaaacacaact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577918.1 True 533 lncRNA 0.47 3 32871746 32873023

Neighbor

gene id symbol gene type direction distance location
LOC117596934 NA coding downstream 26476 32844101 ~ 32845270 (-)
LOC117596924 NA coding downstream 36024 32835039 ~ 32835722 (-)
LOC117597140 NA coding downstream 46179 32823558 ~ 32825567 (-)
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 1144194 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 1327112 31538539 ~ 31544634 (-)
LOC117597141 NA coding upstream 99762 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 123333 32996356 ~ 32996892 (-)
LOC117597007 NA coding upstream 159995 33033018 ~ 33033661 (-)
c4h14orf119 LOC108267721 coding upstream 258064 33131087 ~ 33135775 (-)
cbln12 LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 coding upstream 292919 33165942 ~ 33168027 (-)
G74702 NA non-coding downstream 9087 32862207 ~ 32862659 (-)
LOC117596967 NA non-coding downstream 20371 32849927 ~ 32851375 (-)
LOC113540133 NA non-coding downstream 55465 32815429 ~ 32816281 (-)
LOC117597139 NA non-coding downstream 60011 32810432 ~ 32811735 (-)
LOC117596923 NA non-coding downstream 61450 32809596 ~ 32810296 (-)
G74717 NA non-coding upstream 152398 33025421 ~ 33025846 (-)
G74720 NA non-coding upstream 158019 33031042 ~ 33031426 (-)
G74731 NA non-coding upstream 211375 33084398 ~ 33084836 (-)
G74736 NA non-coding upstream 235106 33108129 ~ 33108638 (-)
G74737 NA non-coding upstream 241721 33114744 ~ 33114997 (-)
G74703 NA other downstream 3280 32865946 ~ 32868466 (-)
LOC117596929 NA other downstream 206326 32661892 ~ 32665420 (-)
G74644 NA other downstream 227212 32644024 ~ 32644534 (-)
LOC117596950 NA other downstream 238035 32633213 ~ 32633711 (-)
LOC117596946 NA other downstream 667841 32203394 ~ 32203905 (-)
LOC117597171 NA other upstream 73111 32946134 ~ 32947158 (-)
LOC117597170 NA other upstream 76811 32949834 ~ 32950494 (-)
LOC117597177 NA other upstream 97981 32971004 ~ 32971513 (-)
LOC117597009 NA other upstream 161880 33034903 ~ 33042101 (-)
LOC117597008 NA other upstream 164038 33037061 ~ 33037706 (-)

Expression


Co-expression Network