LOC117596969


Basic Information

Item Value
gene id LOC117596969
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32738103 ~ 32740111 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577921.1
ACAACGCAGTTGTGTTTTTTCGGGGGTAGTCAGAGAAGTTTGGGGTGGAAAGAATGACTTTTCACCGCGAAGAAAGCTCGCAGCCGTCACATTCACGGACGTCTTGAGTGGCAGGCTCTGTGGAGAAAGTCTTCTGTGAGTTATTTCAGCATGAATGCATCAGTTCACAGCTCGCCGCACGAGAGAGCGCTGTGTGAGAGTTCGAAGGAGGCTGCACGCACCCCAGCCTCGCGTGAGTCCGCTGCGGAAGAAACCCAGTACGAGGATATTCCCCGTGAGAAAGTCTCTTTTACGGTTCGtaacgacttttttttttcttcgttcTTTTGTTATTAGATTAAGGGTGAAAGATCATCCGGAAGAATATTCCcgtgtttatttttctcaagTTCAGTGATGCAGTTATAAGTCATATTATTCGTTTGAAATTCGGAAGAAGACACccgtgtttattttattaattcgtTGTAAAGTATCACggtggtgtgtgtagtttggAGTTGTGTCACCTGCGTGATAACCGTCTTTTACGAGACTGAGAGATAGTCGAGTCAAGGTTGGGAGGTGGAAGAGGATTTTCACGGATTCATCTGACCTGTTCCAGGCGGGAGGCGTCACGGAGGCTGTGCTTTTCAGCTCATCGTGCATTGAGGGTCAGCGATTATTATTCCGCAAGTGAAATCTAGTTTCTCCTGGATTCCTCTTACTGATGTTGcagaggCTGTAGATGAGCTCATTAAACCAGACCAAACCATCATACCTTCACGTGAAGGCAGCAGCaccacactgacctgcacataTGATGACTCGGCTCTCTATCTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577921.1 True 825 lncRNA 0.47 3 32738103 32740111

Neighbor

gene id symbol gene type direction distance location
LOC117597132 NA coding upstream 210443 32524877 ~ 32527660 (+)
LOC117596939 NA coding upstream 244479 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 261340 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 333002 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 340706 32396906 ~ 32397397 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 434363 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 517118 33257229 ~ 33259292 (+)
G74655 NA non-coding upstream 30605 32707093 ~ 32707498 (+)
LOC117596955 NA non-coding upstream 177334 32560263 ~ 32560769 (+)
LOC117597133 NA non-coding upstream 184799 32542925 ~ 32553304 (+)
LOC117596964 NA non-coding upstream 204497 32532846 ~ 32533606 (+)
G74580 NA non-coding upstream 398029 32318432 ~ 32340074 (+)
LOC117596944 NA non-coding downstream 140600 32880711 ~ 32881365 (+)
G74672 NA non-coding downstream 156693 32896804 ~ 32924735 (+)
G74676 NA non-coding downstream 175429 32915540 ~ 32915973 (+)
LOC117596970 NA non-coding downstream 186505 32926616 ~ 32927014 (+)
G74686 NA non-coding downstream 283865 33023976 ~ 33024331 (+)
LOC117597137 NA other upstream 1832 32721824 ~ 32736271 (+)
LOC117596949 NA other upstream 17639 32713173 ~ 32720464 (+)
LOC117596943 NA other upstream 22580 32714954 ~ 32715523 (+)
LOC117597136 NA other upstream 23242 32699777 ~ 32714861 (+)
LOC117596958 NA other upstream 44000 32693603 ~ 32694103 (+)
LOC117596925 NA other downstream 2154 32742265 ~ 32743137 (+)
LOC117597138 NA other downstream 5389 32745500 ~ 32747793 (+)
mmp14b mmp14b,LOC108267723,LOC103041213,LOC108438939 other downstream 389932 33130043 ~ 33148431 (+)

Expression


Co-expression Network