Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596970 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 32926616 ~ 32927014 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577922.1 | True | 150 | ncRNA | 0.49 | 3 | 32926616 | 32927014 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117597132 | NA | coding | upstream | 398956 | 32524877 ~ 32527660 (+) |
| LOC117596939 | NA | coding | upstream | 432992 | 32492958 ~ 32493624 (+) |
| LOC117596954 | NA | coding | upstream | 449853 | 32476272 ~ 32476763 (+) |
| LOC117597131 | NA | coding | upstream | 521515 | 32404548 ~ 32405101 (+) |
| LOC117596953 | NA | coding | upstream | 529219 | 32396906 ~ 32397397 (+) |
| chd8 | chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 | coding | downstream | 247460 | 33174474 ~ 33249659 (+) |
| gpr25 | LOC108267152 | coding | downstream | 330215 | 33257229 ~ 33259292 (+) |
| G74672 | NA | non-coding | upstream | 1881 | 32896804 ~ 32924735 (+) |
| G74676 | NA | non-coding | upstream | 10643 | 32915540 ~ 32915973 (+) |
| LOC117596944 | NA | non-coding | upstream | 45251 | 32880711 ~ 32881365 (+) |
| LOC117596969 | NA | non-coding | upstream | 186505 | 32738103 ~ 32740111 (+) |
| G74655 | NA | non-coding | upstream | 219118 | 32707093 ~ 32707498 (+) |
| G74686 | NA | non-coding | downstream | 96962 | 33023976 ~ 33024331 (+) |
| G74747 | NA | non-coding | downstream | 198654 | 33125668 ~ 33125884 (+) |
| G74750 | NA | non-coding | downstream | 221523 | 33148537 ~ 33149053 (+) |
| LOC117597138 | NA | other | upstream | 178823 | 32745500 ~ 32747793 (+) |
| LOC117596925 | NA | other | upstream | 183479 | 32742265 ~ 32743137 (+) |
| LOC117597137 | NA | other | upstream | 190345 | 32721824 ~ 32736271 (+) |
| LOC117596949 | NA | other | upstream | 206152 | 32713173 ~ 32720464 (+) |
| mmp14b | mmp14b,LOC108267723,LOC103041213,LOC108438939 | other | downstream | 203029 | 33130043 ~ 33148431 (+) |
