LOC113540369 (LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929)


Basic Information

Item Value
gene id LOC113540369
gene name LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10202231 ~ 10211232 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577927.1
cagaaCCGCAGAGACAGAGCGTGGAATATGAGTTAGTAAAGAAGAAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCAAACTCATCCTGTCTGCTGATGGAAAACAAGTGACACACGGAGACACACGACAGGATCTCCCTGATACACCACAGAGGTTTACTTCTTATTACAGTGTTGTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTTGGTGGACATTAGGAGTCGTGAGAGAGAACATTGACAGGAAGAGGTGGATTACACCGAAACCTCAGACTGGATTCTGGACTGTGGCTCTGTGGGGTGAGAATCAGTATGAGGCTTGTGCTGGTCCTGACGTCCCCCTTACACTGAGAGAGAAGGTGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGTCCTTGGTACAATGAAGGAGGTAAAAATTCAGCACCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATTATCTATTAAATGgtgagaataaaaagaaatattttacttttttggtgAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatccTACAGtctgtttttacacattatgaTTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCACACTGAGTTTTACTGCAGAATTGAATCTGATCAATAAAATGGATTAAGTTCAGCTGCTGATGTCTGTGTAGATACAACCGAACAAAACTGTTTCTCCTTCAGActccatcaaacacaaatacaatcaaattc

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577927.1 True 939 lncRNA 0.40 3 10202231 10211232

Neighbor

gene id symbol gene type direction distance location
LOC113538503 LOC108261535 coding downstream 12303 10167917 ~ 10189928 (-)
LOC117597105 LOC108267929 coding downstream 58802 10111162 ~ 10143429 (-)
LOC113540311 LOC108267981 coding downstream 95702 10095779 ~ 10106529 (-)
LOC113540363 NA coding downstream 107115 10093747 ~ 10095116 (-)
trmt10b trmt10b coding downstream 149017 10046572 ~ 10053214 (-)
LOC113547269 NA coding upstream 20442 10231674 ~ 10236612 (-)
LOC117596978 LOC108267983,LOC108267929 coding upstream 97419 10308651 ~ 10320200 (-)
LOC113540334 LOC108267980 coding upstream 122237 10333469 ~ 10344131 (-)
f13a1b LOC108267979,LOC108411459 coding upstream 135048 10346280 ~ 10359403 (-)
tex261 tex261,LOC107755640 coding upstream 187321 10398553 ~ 10404916 (-)
LOC113540700 NA non-coding downstream 160452 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 161537 10040482 ~ 10040694 (-)
LOC113540709 NA non-coding downstream 162644 10039380 ~ 10039587 (-)
LOC113540720 NA non-coding downstream 163465 10038554 ~ 10038766 (-)
LOC117597222 NA non-coding downstream 164874 10037145 ~ 10037357 (-)
G62108 LOC108267978,LOC108411458 non-coding upstream 152780 10364012 ~ 10364892 (-)
G62109 LOC108267978 non-coding upstream 157089 10368321 ~ 10370563 (-)
G62125 NA non-coding upstream 263538 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 286289 10497521 ~ 10499087 (-)
G62167 NA non-coding upstream 322841 10534073 ~ 10534422 (-)
LOC113540372 NA other downstream 121994 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 129002 10070406 ~ 10073229 (-)
G61900 NA other downstream 160465 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 396913 9776278 ~ 9805318 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 673406 8639468 ~ 9528825 (-)
trnan-guu_9 NA other upstream 275436 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 279116 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 280358 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 283933 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 327013 10538245 ~ 10562006 (-)

Expression


Co-expression Network