LOC113540371


Basic Information

Item Value
gene id LOC113540371
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11020133 ~ 11022796 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577928.1
GAGGAAGCATGGCCTTCCTTTTATGCTACCTGCAATGCTGAAGAGTCCAgattgagaaatgtgtgtgtttcaggctcaATCAGTGTTGAATGCGTTTTTTAACATGCTACCCCTAGAAGGActcttttataacatttttaacatgtattCTAGAAGGACTCTTTTATACTAGTAGTTTTACTACTGGTATGCTCATTGTGTGAATACGGGAAGCATTGTGTGAATGCTAAGATTGCTACTTCACACCCTATTGTGGACTCCTTGGGATTATACACTCAAGTCAGGAACGTTTGCCTGGAAGCACGTGGTGGATGGTGGTTGATGGTGGTTCGTTTGGACAACATGtgtatcttcatcatcatcatcttcgtCATCATCTTCAACAGCATCGTCGTCAATCAACGACAAGTACAATAATCATCCATCAAAAGACATCCGGGTCTCACATTGGACACCGTGCAGCCAACAGAAAGAAGGCAGAGGCTCGCAAAACTGGAGGGGGGACCTGCACCACCCCCACTCACAAATACAGAGGAAATGGCCTTGAGCCTGAACACTGGAAGGCCAGTGGCAGCGGGAATTCCAGGAGGGAGTTCATCAGAGCCAGTCACTCCCCAGGATACAAGTGCCTTCATAAAATATTCTGATGGTAATATCTGCCTTTTGGAGCCTCCTGTCATAACAGAACCCTAGGCAGTTgaagatgaggatgatgaaacCACTTCTGCCACAGAGAGGCCTACAGAGAGTGTGGAAGAACAGCACGAGGAGGGTCCACCAAATTCTGCTGCACAGATGAACACATTACCAGTTAAGGAGTTATATAGACTTCATCTTATTCAAAAAAtcgaaaaaaacagcaaagaaatTATACTTGGACCGCCAGATCCAAAAAGGCAGCTCTGGAAATCGACATCCTGAAAGAAAAGCTAAAGGTGAGAGTATGGTCACAGGTGAATTGTATGAATTATTGgaaaaatttgaaaatctaaCAGTTGCTTTTGTATTTGA
>XR_004577929.1
GCATGGCCTTCCTTTTATGCTACCTGCAATGCTGAAGAGTCCAgattgagaaatgtgtgtgtttcaggctcaATCAGTAAGGACTCTTTTATACTAGTAGTTTTACTACTGGTATGCTCATTGTGTGAATACGGGAAGCATTGTGTGAATGCTAAGATTGCTACTTCACACCCTATTGTGGACTCCTTGGGATTATACACTCAAGTCAGGAACGTTTGCCTGGAAGCACGTGGTGGATGGTGGTTGATGGTGGTTCGTTTGGACAACATGtgtatcttcatcatcatcatcttcgtCATCATCTTCAACAGCATCGTCGTCAATCAACGACAAGTACAATAATCATCCATCAAAAGACATCCGGGTCTCACATTGGACACCGTGCAGCCAACAGAAAGAAGGCAGAGGCTCGCAAAACTGGAGGGGGGACCTGCACCACCCCCACTCACAAATACAGAGGAAATGGCCTTGAGCCTGAACACTGGAAGGCCAGTGGCAGCGGGAATTCCAGGAGGGAGTTCATCAGAGCCAGTCACTCCCCAGGATACAAGTGCCTTCATAAAATATTCTGATGGTAATATCTGCCTTTTGGAGCCTCCTGTCATAACAGAACCCTAGGCAGTTgaagatgaggatgatgaaacCACTTCTGCCACAGAGAGGCCTACAGAGAGTGTGGAAGAACAGCACGAGGAGGGTCCACCAAATTCTGCTGCACAGATGAACACATTACCAGTTAAGGAGTTATATAGACTTCATCTTATTCAAAAAAtcgaaaaaaacagcaaagaaatTATACTTGGACCGCCAGATCCAAAAAGGCAGCTCTGGAAATCGACATCCTGAAAGAAAAGCTAAAGGTGAGAGTATGGTCACAGGTGAATTGTATGAATTATTGgaaaaatttgaaaatctaaCAGTTGCTTTTGTATTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577928.1 True 1011 lncRNA 0.43 7 11020133 11022796
XR_004577929.1 False 936 lncRNA 0.44 7 11020139 11022796

Neighbor

gene id symbol gene type direction distance location
LOC117596976 LOC108267929 coding upstream 31567 10964062 ~ 10988566 (+)
LOC117596975 LOC108267982 coding upstream 57574 10944179 ~ 10962559 (+)
LOC113539892 LOC108267929,LOC108261535 coding upstream 80662 10918503 ~ 10939471 (+)
gmpr2 gmpr2,LOC108267954,LOC108440043,LOC107753927 coding upstream 102583 10910916 ~ 10917550 (+)
slc7a8a slc7a8a,LOC108267955,LOC107668787,LOC107753926,LOC108440039,LOC107742270,LOC107691931,LOC107562402 coding upstream 114575 10885506 ~ 10905558 (+)
LOC113539896 LOC108261535 coding downstream 68185 11090981 ~ 11111094 (+)
LOC113540324 NA coding downstream 107379 11130175 ~ 11137426 (+)
mmp14a mmp14,mmp14a,LOC107691938,LOC107753930 coding downstream 137125 11159921 ~ 11171340 (+)
ajuba ajuba coding downstream 160939 11183735 ~ 11191994 (+)
dhrs4 dhrs4,dhrs1,LOC103023174,LOC107753983,LOC108440044,LOC107742330,LOC107563424 coding downstream 217878 11240674 ~ 11244577 (+)
G62416 NA non-coding upstream 109991 10907025 ~ 10910142 (+)
G62373 NA non-coding upstream 155272 10864655 ~ 10864861 (+)
LOC117596985 NA non-coding upstream 203581 10815750 ~ 10816552 (+)
trnak-cuu_20 NA non-coding upstream 488605 10531456 ~ 10531528 (+)
trnan-guu_13 NA non-coding upstream 489089 10530971 ~ 10531044 (+)
G62549 NA non-coding downstream 154233 11177029 ~ 11193851 (+)
LOC117596983 NA non-coding downstream 159974 11182770 ~ 11183734 (+)
G62554 NA non-coding downstream 192359 11215155 ~ 11215743 (+)
G62572 LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938 non-coding downstream 252643 11275439 ~ 11366783 (+)
G62585 LOC108267738,LOC108267739,LOC108267932,LOC108267937,LOC108267938,LOC108267241,LOC108267941 non-coding downstream 297301 11320097 ~ 11360515 (+)
c4h4orf48 c7h4orf48 other upstream 356722 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 524663 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 528264 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 529483 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 530697 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 567919 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 622105 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1269695 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2183861 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 2252666 13275462 ~ 13285834 (+)

Expression


Co-expression Network