LOC117596980


Basic Information

Item Value
gene id LOC117596980
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11080531 ~ 11083012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577933.1
CCAATGTTGACAGGTATGACAAGCACCTGTTAATTTCCGACCCTGTTCTCAACCTTATTTAACCTTATCTacatatattttctatatattttattttatctattatatattttacctttttttccaCCTGGTCCATGTACGATGAggaatctttctttcttcttcttcttggcaATTGTGAAAGCAATACGCttttcatttcagcattttttttctgcatatgTTCTGTATAATTTAAAAGTAGTCTATTTTCTGAACACCCACCTACATGTAGGCAAgtccatgtaaaaaaaaaaaataataaaatacgcTGATTGGTTGATGTTTGAACTGCATCCAATGAAAAGCCAGATCGCTGGCTCATTTGGACGAGCACCAGAGAGCGGGAAAACGGGACGTTgcttcagcagctctgtgtttaCACATTGCTTAGACGTTGATTTCTTCAGTAACGTCACCAGGAGCCTAAGGTGTGATGAGAAAGTTTGCAGTGATCCAGTGGGTCAGTGGGGAGGATGCTGGGATGTATAGCGAGGTGAAACCGATGCCATACGTAAATATGATGACACCAAGGTGGATGACGATGGATACCCACCAACTGACTATTCAGCTGCTGTGGAGTGGCAGAAAGGGAAAAAGCCAAAACATGGCTGGCCGGTGTACATGGCCTCTATCAAGTTTGTGAGCAACAATCAATTTCATACTAATGCTAAAATTAAGGAATTTCTGGGGTTGGAGTCTGATGAAAGGAATAAGCCACTGCCTAAGAAAAGAGCCTCAGTCCCGCCATCAAGATAGACAGAGTCAGATGAAACTGATTTTGAGAATACACTGACTCAAAGGAAAAGGACAGTGAACCACAGAGAAATGTTGCCCAAATCATTGTTGATGAGTATCAAGCCACAATCTTGACAAAGACTCATCAGAAGCTGAAAGAAATGGAGGAGGAAAACGAAAAATTGAGAAATGACAATGAAAAATTAAGAACAATGCTTATTAGAGGCATGTATTGCAGTTATTTTACTATTGTGTTTTTACTGTCTTTGGGACATTCTACCAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577933.1 True 1062 lncRNA 0.39 4 11080531 11083012

Neighbor

gene id symbol gene type direction distance location
LOC113540343 NA coding downstream 56890 11022870 ~ 11023641 (-)
haus3 haus3 coding downstream 325963 10747772 ~ 10754568 (-)
nelfa nelfa,LOC107562310,LOC107741467,LOC107753914,LOC107691925,LOC107588166 coding downstream 422390 10646651 ~ 10658141 (-)
tesk1 tesk1 coding downstream 449511 10601837 ~ 10631020 (-)
si:dkeyp-75h12.7 NA coding downstream 478846 10595693 ~ 10601685 (-)
LOC113539898 LOC108267947 coding upstream 54403 11137415 ~ 11146874 (-)
lrp10 lrp10 coding upstream 63940 11146952 ~ 11157112 (-)
acin1b acin1,LOC108267949 coding upstream 109520 11192532 ~ 11217230 (-)
LOC113540753 NA coding upstream 125721 11208733 ~ 11208833 (-)
LOC113540751 NA coding upstream 129822 11212834 ~ 11212934 (-)
G62504 LOC108267929,LOC108261535 non-coding downstream 5828 11042345 ~ 11074703 (-)
G62469 LOC108267929 non-coding downstream 126787 10926840 ~ 10953744 (-)
G62183 NA non-coding downstream 508171 10572155 ~ 10572360 (-)
G62167 NA non-coding downstream 546109 10534073 ~ 10534422 (-)
LOC117596989 NA non-coding downstream 581444 10497521 ~ 10499087 (-)
G62743 NA non-coding upstream 229402 11312414 ~ 11345959 (-)
G62754 NA non-coding upstream 238358 11321370 ~ 11361429 (-)
LOC117596984 NA non-coding upstream 267685 11350697 ~ 11358554 (-)
G62735 LOC108261673,LOC108267931,LOC108267938,LOC108267738,LOC108267739,LOC108267740,LOC108267935,LOC108267932 non-coding upstream 282243 11365255 ~ 11366181 (-)
G62734 LOC108267738,LOC108267739,LOC108267931,LOC108267241,LOC108267938,LOC108261673,LOC108267740,LOC108267935 non-coding upstream 358105 11441117 ~ 11471047 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other downstream 170320 10907025 ~ 10910211 (-)
svep1 svep1 other downstream 217033 10775252 ~ 10863498 (-)
poln poln,LOC107563414 other downstream 332885 10693257 ~ 10747646 (-)
gba2 gba2,LOC107749818,LOC107741462 other downstream 518525 10538245 ~ 10562006 (-)
trnan-guu_12 NA other downstream 585293 10495165 ~ 10495238 (-)
mrpl52 mrpl52 other upstream 94673 11177685 ~ 11182369 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other upstream 183372 11266384 ~ 11360044 (-)
LOC113538166 LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927 other upstream 203437 11286449 ~ 11313616 (-)
si:dkey-183c6.7 LOC108267942 other upstream 319015 11402027 ~ 11415897 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other upstream 441814 11524826 ~ 11535243 (-)

Expression


Co-expression Network