LOC117596985


Basic Information

Item Value
gene id LOC117596985
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10815750 ~ 10816552 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577939.1
CAACCTGAAAAATGAACCAGagtacatatttattatactttGTACCAGAGCACTGCCTAAAATCTGAAGGAGTTTGAAGTCTGAAAGCtaacacctttTTGACTAGGACATATGGTGGGCAATGAACAtagccatccatccattctctgtgccgcttatcctacacaggagGATAATGAGGGAgtcacaggggagcctggagcctatcccagtggactcggggcacaaggtagGGAATattctggatgggatgccagctCATCACAGGGTGCAATCGCACACACACCATGGATAATTTTGGAATGCCAAACAGCCTACGACACGTCTTTGGATTGgaggaggaaacccctgaagcacaagCAGAACATGCAGCCCCTGaagtgtgaggcaacagtgctgaccactaagccaccaGGTCCCCCAAACTCCATAATCAGTCAGAGTTTTCCTTTAGGGTTTTTTCGACCTGAGAATGCATTTAAGATGGAAGATTTGTGCTTTGTGGATTCCCTgtaacaagctacatttttttccataagggATTGAATGTTTATATCTGCTAAAGCAAAAGTGATAATAGGAATTAACTTAATTCccagatgtttcacaacaataaatggttaaaaaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577939.1 True 630 lncRNA 0.43 2 10815750 10816552

Neighbor

gene id symbol gene type direction distance location
txn NA coding upstream 40514 10771447 ~ 10775236 (+)
si:dkey-11k2.7 ptgr1,LOC108440055 coding upstream 45541 10763575 ~ 10770209 (+)
ptgr1 ptgr1,LOC108267959,LOC107588162,LOC107753922,LOC107668743,LOC107691929,LOC107562349 coding upstream 55725 10754877 ~ 10760025 (+)
nat8l nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165 coding upstream 126098 10679257 ~ 10689652 (+)
faah2b LOC108267965 coding upstream 170999 10635705 ~ 10644751 (+)
slc7a8a slc7a8a,LOC108267955,LOC107668787,LOC107753926,LOC108440039,LOC107742270,LOC107691931,LOC107562402 coding downstream 68954 10885506 ~ 10905558 (+)
gmpr2 gmpr2,LOC108267954,LOC108440043,LOC107753927 coding downstream 94364 10910916 ~ 10917550 (+)
LOC113539892 LOC108267929,LOC108261535 coding downstream 101951 10918503 ~ 10939471 (+)
LOC117596975 LOC108267982 coding downstream 127627 10944179 ~ 10962559 (+)
LOC117596976 LOC108267929 coding downstream 147510 10964062 ~ 10988566 (+)
trnak-cuu_20 NA non-coding upstream 284222 10531456 ~ 10531528 (+)
trnan-guu_13 NA non-coding upstream 284706 10530971 ~ 10531044 (+)
LOC117596986 NA non-coding upstream 309273 10499275 ~ 10506477 (+)
G62131 NA non-coding upstream 318390 10497130 ~ 10497360 (+)
G61842 NA non-coding upstream 456786 10357814 ~ 10358964 (+)
G62373 NA non-coding downstream 48103 10864655 ~ 10864861 (+)
G62416 NA non-coding downstream 90473 10907025 ~ 10910142 (+)
LOC113540371 NA non-coding downstream 203581 11020133 ~ 11022796 (+)
G62549 NA non-coding downstream 360477 11177029 ~ 11193851 (+)
LOC117596983 NA non-coding downstream 366218 11182770 ~ 11183734 (+)
c4h4orf48 c7h4orf48 other upstream 152339 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 320280 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 323881 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 325100 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 326314 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 774163 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 828349 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1475939 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2390105 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 2458910 13275462 ~ 13285834 (+)

Expression


Co-expression Network