LOC117596987


Basic Information

Item Value
gene id LOC117596987
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10289874 ~ 10290684 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577941.1
CCCCGGAGGGAGGGAGAGTGGAGTTTCCGGCAGGACGTTACCCACAGCAACGGAAGATACATTGCCTCACATAGCCGTCACATCAGCTCCACTTGGACAGTCTTTCACTCAAGATGAAGATGTGCCAGTGACAAGCCAGGACCAAACAGCACAAAGCGAAGaagatgaTTTGGACAACAGCAGCCAAGTGGGACCTGTGGGAAGTGGCtcagacactgagacacagaaagacactTCAAGCAATATAACCATGAACCATATACTGGAAAAACAATATGAAGTATTGACATTGGAAGAGGCAAAACTAAAATTAGAAACACAAAAACTAGAATTAGAGAAAACTAAGCTGAAGTTGGAGCTACAGAACTTTGGACATGAACTGCAGATCTCATTAACCATTGTCCaagaattaattaatcaattaattgtatttaatcatttctgaGATTTTCCTGTTGACTTTACTTGTTATGTAGTTAAATTAAAGCAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577941.1 True 492 lncRNA 0.41 3 10289874 10290684

Neighbor

gene id symbol gene type direction distance location
LOC117597107 LOC108267981 coding upstream 9062 10270843 ~ 10280812 (+)
LOC113538341 NA coding upstream 23116 10236752 ~ 10266758 (+)
LOC117597106 LOC108267738,LOC108267931,LOC108267929,LOC108267937 coding upstream 65271 10223782 ~ 10224603 (+)
ino80b ino80b coding upstream 292826 9992956 ~ 9997048 (+)
clcn3 clcn3,LOC107692822,LOC107696737 coding upstream 323042 9927321 ~ 9966832 (+)
LOC113540310 LOC108267978 coding downstream 72306 10362990 ~ 10370654 (+)
si:ch211-1o7.2 ankrd53 coding downstream 101691 10392375 ~ 10396736 (+)
trnak-cuu_4 NA coding downstream 183934 10474618 ~ 10474690 (+)
trnak-cuu_5 NA coding downstream 185173 10475857 ~ 10475929 (+)
trnak-cuu_6 NA coding downstream 186405 10477089 ~ 10477162 (+)
LOC113540370 NA non-coding upstream 193806 10024585 ~ 10096068 (+)
G61735 NA non-coding upstream 242323 10046592 ~ 10047551 (+)
G61689 NA non-coding upstream 320974 9881068 ~ 9968900 (+)
G61696 pfdn2,LOC103133045,LOC103145934,LOC107745204 non-coding upstream 371091 9914235 ~ 9918783 (+)
G61638 NA non-coding upstream 697131 9578364 ~ 9592743 (+)
G61842 NA non-coding downstream 67130 10357814 ~ 10358964 (+)
G62131 NA non-coding downstream 206446 10497130 ~ 10497360 (+)
LOC117596986 NA non-coding downstream 208591 10499275 ~ 10506477 (+)
trnan-guu_13 NA non-coding downstream 240287 10530971 ~ 10531044 (+)
trnak-cuu_20 NA non-coding downstream 240772 10531456 ~ 10531528 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other upstream 23595 10167846 ~ 10266279 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other upstream 407161 9860894 ~ 9882713 (+)
gal3st3 gal3st3 other upstream 457594 9807321 ~ 9832280 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other upstream 515825 9758460 ~ 9774049 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other upstream 919389 8724545 ~ 9370485 (+)
trnak-cuu_13 NA other downstream 184084 10474768 ~ 10486042 (+)
trnak-cuu_14 NA other downstream 196218 10486902 ~ 10486974 (+)
trnak-cuu_15 NA other downstream 197456 10488140 ~ 10488212 (+)
trnak-cuu_16 NA other downstream 198681 10489365 ~ 10489436 (+)
trnak-cuu_17 NA other downstream 199894 10490578 ~ 10490650 (+)

Expression


Co-expression Network