LOC117596991


Basic Information

Item Value
gene id LOC117596991
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12922870 ~ 12926987 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577946.1
CTTTTCAGGCACAGAGGAACAGATGGGGGGAGACAAGGTGGGAGACACACCTGTTTTTGTctacagagagaatgagagacagaatggaagagagagaaaggGAGTGATTCAAAGCCAAAAATGTGTGCAAACACTCTCACCTCCAACCCTCGATGAAAATGAACTCCAATAATAAACTCCGTTCTCTGCCTGACAAGCACATGATGGTACTTCTGTGATCCATCCTGATTTcccacttctgcttggagctttcatcacctgaaaatcacctgatgctgctgaggatggccccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577946.1 True 294 lncRNA 0.47 3 12922870 12926987

Neighbor

gene id symbol gene type direction distance location
efnb3b efnb3,efnb3b,LOC107597046,LOC106577756 coding upstream 61653 12795941 ~ 12861217 (+)
wrap53 wrap53 coding upstream 134645 12777177 ~ 12788225 (+)
gigyf1a gigyf1 coding upstream 154966 12742257 ~ 12767904 (+)
epoa epo coding upstream 189392 12718253 ~ 12733478 (+)
LOC113540507 LOC108267598 coding upstream 206138 12712841 ~ 12716732 (+)
serpinh2 LOC108267141,LOC108412061 coding downstream 24082 12951069 ~ 12976437 (+)
dnah2 dnah2 coding downstream 53862 12980849 ~ 13115167 (+)
kdm6ba kdm6b,LOC106608825 coding downstream 189229 13116216 ~ 13198549 (+)
trip6 trip6,LOC103041331 coding downstream 305647 13232634 ~ 13242400 (+)
mettl3 mettl3,LOC107659734,LOC107595277 coding downstream 318998 13245985 ~ 13251814 (+)
G63547 NA non-coding upstream 88540 12801894 ~ 12834330 (+)
LOC113540557 NA non-coding upstream 150048 12768585 ~ 12772822 (+)
G63242 NA non-coding upstream 564622 12357832 ~ 12358248 (+)
G63241 NA non-coding upstream 565189 12355550 ~ 12357681 (+)
G63137 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC107572570,LOC107753961,LOC107659726,LOC107588125 non-coding upstream 673082 12248663 ~ 12249788 (+)
G63685 NA non-coding downstream 192481 13119468 ~ 13119677 (+)
G63696 NA non-coding downstream 208672 13135659 ~ 13135860 (+)
G63666 NA non-coding downstream 272020 13199007 ~ 13199862 (+)
LOC117597082 NA non-coding downstream 331887 13258874 ~ 13267034 (+)
G63889 NA non-coding downstream 460611 13387598 ~ 13387954 (+)
si:dkey-112a7.4 LOC108268066 other upstream 627737 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1217534 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1317640 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 2259459 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 2427400 10495398 ~ 10495470 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 279670 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 348475 13275462 ~ 13285834 (+)
G63903 NA other downstream 491390 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 541565 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 631636 13558623 ~ 13562266 (+)

Expression


Co-expression Network