LOC117596997


Basic Information

Item Value
gene id LOC117596997
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6301325 ~ 6305562 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577956.1
CTGATTCATATCAAGtgttttatatcaattaattcATATCAACTGCTGCATATTAACTGCTTCATATGAACTGATTCACATCAACTGACTGATATCAACTGAGTCATTTCAACTGATTCATATGAATTGAATTATATCAATTGAGTCATATCAACTTGTCTGTCATCAACAGATTCATATTAATCGATGAGTATCCCAGAGAGCAGATTATTTAAGTGAATATAAACAGATTGGATGAAAATCCTATGTTTTTACAGTTACCAGttcatgtgaatgtttttgtattttcttacaTTTAGTGAAAATGTGTGTCATATAGATATCTTCATACTGTCTGAACATTTAAAacgtgtgtgtataatataatataatataatataatggaaCCCGCCggtctctctgtatgtgtgtgtgaactctcAGTAGCAGGCCGCTCTTTGCGGCGGGGTGTGGAGGTCCAGGtcgtctcttctctctctgttcctcacGGTGTCTCTTTGAACGAGGAGGACAGCGTGTGGAGTGGAAGAGCAGGAAACAGGTGCTGCTCAGCTCAAGCTGCTCTCTCTGTTTGATATCCTTTATAAGAAGCAGACGGAGCGACGGGGCGTAGCCACAAACAGATGCTCCGAAAGAGCGGAAAGACGGCTTCATCTCAGCACCACCTTGCTCTCCAGGCAGAGACGGAAAACATACAAGAAATTCAATAAAGAGTGCAGAAAAGtggtgACTGATTGATAACGGTGACGCCTTCTTTGCACCTTCTTCTCACAGTAGCATAGACACCCAATATGCTGCGTCAACgtaacacacccaaacacacatctGGAAAGAGATGCACGTTCTGCACAAGGACATCTTTCTCACACAGGCGCCGCCCCGAAGGCGCCCTGAACCTCAGTCCGCGTTGGAcaccagaataaagcagagaCCTGGGTGGCGCTGGACCTTCTGTATTTCTACTTACTCTGTGTTAGCTTTATGGACAGCTATGGACTCGTCTCAGAAGACCAGAGCAAATAACGGGGGTCAGAAAAAGCAGCCACGTCTTGACACCTACCTCAGAAAATACAAATGTGAGAAAATCTTCCATCCATCTCCATGAAAGTGTCCTTCACTGACCACCAGCGATGGAAAATCCAGTCTGCTACACTACAATGTTTGATTTAAAAGAGTTCTTTACATAGCTTTCTCaagaggttctacttggaaccttgtGTGAAAGGGAATCTGCCAAAATTACGTAAGATGCATTAAGTCACTAAAGCTGGACGTTTCATGGATCATTCATTTACTCGacataaaacagaaatttaATCATATTCAGATCATATTACTGAATTTAAggttcaataataaataatcaatatagaaatatatagtTTATTACGTAAATATCAAACTGAATCTGTTAGTAAgcattatttaatgcatttaaaaaaactattaaaaatataaagattatCAGCTCCAGTCCTGGGAATAGATCTCGCAGTGGTTCAGGTTTTTCCCTGATTTTATCAGTTTTATTATTAcgtatttattaaattaatccAACTCCAGCTCATGAACAGCTTCTCGGAGTAATATCAACATGTCGAGGATGATTCGTACACCTGGCGTATATTCATAAACCTTTGAATTCGTTCATCTTTTCTTTTGAAGAGTTAAAAAATGGCCAAACTTTCTCTGTATGTGATAAAGACGCATGCAAACATCTCGGACACATCAATACGGACGGCGACTCCAGTCAAATTCACATGTGCCCCTAGAACTGGATTAACCTGCTGAAAATTAGCATAATAAGTAAATCTGGTGTACTTGTATTGGTTAAGTGACATGGGAAAAAAGCGGTCCAGATGTTCCTGGTGGACTTAAAACCGAACATATTCCAGAAACATATTTAAACCCAGTATAATATGGATATGTCAATCTAATCATACATTATACAAATACTGCAgtcttttccaaaaaaaaaaaaaattgactgcATGTATTTCGACACAGTCGTTCTTTGTGAATGCGCTCAGTGCGTCTGCGGACGCGTTCCACCTTCTGAACGGATGTTGGATACACTGCAGAGCATAGCACACTCTCAGCGTGATAGGAACTGGCATGGTTTACCCCGAGCCCAGTTGGTATTACGCAGAACCCCACTCAGTTTCAGCTGCACGGGACAGCGGGGATCGGCGTAGAGCAGGAATGCTCGCTGGCTCTGGTTGCGCCAGACTAAACTGTGGGAAGGCCAAGTCTCTCGCTGGAGATTTGAGCCAAGATGTCCGCTGTTCTTGCTAATCAGATTGATTAGAGGCTGGTAGTCTGGTGTGGGTCTGCATTCTGCTTCATGTCGCCTCCACGCGGAGGCCCTGTTGCGAGAGCGAGTGAGGTCTGCCTGGGATTTTACAGAGACGTCCCGCTTTCGGTTAAACTCTCAGCAAG
>XR_004577957.1
CTGATTCATATCAAGtgttttatatcaattaattcATATCAACTGCTGCATATTAACTGCTTCATATGAACTGATTCACATCAACTGACTGATATCAACTGAGTCATTTCAACTGATTCATATGAATTGAATTATATCAATTGAGTCATATCAACTTGTCTGTCATCAACAGATTCATATTAATCGATGAGTATCCCAGAGAGCAGATTATTTAAGTGAATATAAACAGATTGGATGAAAATCCTATGTTTTTACAGTTACCAGttcatgtgaatgtttttgtattttcttacaTTTAGTGAAAATGTGTGTCATATAGATATCTTCATACTGTCTGAACATTTAAAacgtgtgtgtataatataatataatataatataatggaaCCCGCCggtctctctgtatgtgtgtgtgaactctcAGTAGCAGGCCGCTCTTTGCGGCGGGGTGTGGAGGTCCAGGtcgtctcttctctctctgttcctcacGGTGTCTCTTTGAACGAGGAGGACAGCGTGTGGAGTGGAAGAGCAGGAAACAGGTGCTGCTCAGCTCAAGCTGCTCTCTCTGTTTGATATCCTTTATAAGAAGCAGACGGAGCGACGGGGCGTAGCCACAAACAGATGCTCCGAAAGAGCGGAAAGACGGCTTCATCTCAGCACCACCTTGCTCTCCAGGCAGAGACGGAAAACATACAAGAAATTCAATAAAGAGTGCAGAAAAGtggtgACTGATTGATAACGGTGACGCCTTCTTTGCACCTTCTTCTCACAGTAGCATAGACACCCAATATGCTGCGTCAACgtaacacacccaaacacacatctGGAAAGAGATGCACGTTCTGCACAAGGACATCTTTCTCACACAGGCGCCGCCCCGAAGGCGCCCTGAACCTCAGTCCGCGTTGGAcaccagaataaagcagagaCCTGGGTGGCGCTGGACCTTCTGTATTTCTACTTACTCTGTGTTAGCTTTATGGACAGCTATGGACTCGTCTCAGAAGACCAGAGCAAATAACGGGGGTCAGAAAAAGCAGCCACGTCTTGACACCTACCTCAGAAAATACAAATgaaattcttcaggactgaggagttTATGCTTGATGGTATAACatgacaaaaagagagaaaaagagaggatggtgaaggaacaactgtttatagctgctataacgtaagtgagaagaAGAACTAACTCACAAacgttcaacaacattaaccgtaactataaatggattaaaagtaagacatgtccttctttaataaatttaaaaaaatatacttttttttggaaaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577956.1 True 2439 lncRNA 0.42 3 6301325 6304890
XR_004577957.1 False 1303 lncRNA 0.41 4 6301325 6305562

Neighbor

gene id symbol gene type direction distance location
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding upstream 96435 6202522 ~ 6204890 (+)
foxf2a LOC108267118 coding upstream 124166 6171029 ~ 6177159 (+)
foxq1a LOC108268192 coding upstream 137485 6162153 ~ 6163840 (+)
trnat-ugu_1 NA coding upstream 161953 6139300 ~ 6139372 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding upstream 264093 6014920 ~ 6037232 (+)
wrnip1 wrnip1 coding downstream 245423 6550985 ~ 6572077 (+)
LOC113547283 NA coding downstream 266506 6572068 ~ 6576902 (+)
dhx30 dhx30 coding downstream 274793 6580355 ~ 6602411 (+)
LOC113547232 LOC108262378 coding downstream 338966 6644528 ~ 6683316 (+)
LOC113547277 NA coding downstream 402819 6708381 ~ 6713301 (+)
G60267 NA non-coding upstream 5091 6295991 ~ 6296234 (+)
LOC117596998 NA non-coding upstream 5879 6277605 ~ 6295446 (+)
G60232 NA non-coding upstream 93011 6208102 ~ 6208314 (+)
G60036 NA non-coding upstream 402335 5897899 ~ 5898990 (+)
G60033 NA non-coding upstream 447437 5853669 ~ 5853888 (+)
G60312 NA non-coding downstream 74683 6380245 ~ 6380462 (+)
G60362 NA non-coding downstream 108238 6413800 ~ 6414013 (+)
G60384 NA non-coding downstream 120557 6426119 ~ 6426344 (+)
trnar-ucu_1 NA non-coding downstream 124924 6430486 ~ 6430577 (+)
LOC113547253 NA non-coding downstream 317274 6622836 ~ 6623651 (+)
trnat-ugu_2 NA other upstream 157523 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 705100 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 909496 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 1111612 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 1286512 4974195 ~ 5014813 (+)
LOC117597080 NA other downstream 289564 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 378774 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1750494 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2389790 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2418983 8724545 ~ 9370485 (+)

Expression


Co-expression Network