LOC117596998


Basic Information

Item Value
gene id LOC117596998
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6277605 ~ 6295446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577958.1
TCCATCAGCTCGGGCCAGTTTGCAGCCGAGGAATTCCGCCCCGGCGACAAATCCACTTTTTTACTGCTCTCACAGTCAGGATCCAATCCGAGAGAGAGGTGAGGTCCAAGGGTTAAGGTTTTGCGTCACGGATGGCCGAGTTTTAGCCGTGTGGAAATTACAAATGTCATATTGGGCAGACTCGGAGTTCAGTTCCTGCCTCAGAGACACCGGGTTTCTAACACAGCTCCCACTACATgtgacctttgacctgacCTGGAGGAGGCTCGGGTGAGTTTTTGATCTGGAGGAGGACACTGATCGAGACGCAGAGCGATCCATCGATTCTCATCACGAGCCGAGGAAGAGCCGAGCGCCTGATTACGACTGATGGAGCCACACCAGGAAGGCctgaggGTCACAGGCCTTGCGAGCGCTGCCTTGTGGGACAGGAACATCTTGATTTCATTACAGAGAGGTGGAACCCCAATCATCTGTTCAGTCAATCAGCGTGTGCAGGAGAGAGGATGGAGCGCTGAGAGGCTGAGAGAAGATACGATTAGAAACACTGATCCTGAGAGAAatactgagagtgagacagctactactgagagtgagacagctaCTACTGGAGTGAGACATCTAatactgagagtgagacagctaCTACTGGAGTGAGACATCTAatactgagagtgagacagctaCTACTGGAGTGAGACATCTAatactgagagtgagacagctaCTACTGGAGTGAGACATCTAatactgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577958.1 True 755 lncRNA 0.51 3 6277605 6295446

Neighbor

gene id symbol gene type direction distance location
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding upstream 72715 6202522 ~ 6204890 (+)
foxf2a LOC108267118 coding upstream 100446 6171029 ~ 6177159 (+)
foxq1a LOC108268192 coding upstream 113765 6162153 ~ 6163840 (+)
trnat-ugu_1 NA coding upstream 138233 6139300 ~ 6139372 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding upstream 240373 6014920 ~ 6037232 (+)
wrnip1 wrnip1 coding downstream 255539 6550985 ~ 6572077 (+)
LOC113547283 NA coding downstream 276622 6572068 ~ 6576902 (+)
dhx30 dhx30 coding downstream 284909 6580355 ~ 6602411 (+)
LOC113547232 LOC108262378 coding downstream 349082 6644528 ~ 6683316 (+)
LOC113547277 NA coding downstream 412935 6708381 ~ 6713301 (+)
G60232 NA non-coding upstream 69291 6208102 ~ 6208314 (+)
G60036 NA non-coding upstream 378615 5897899 ~ 5898990 (+)
G60033 NA non-coding upstream 423717 5853669 ~ 5853888 (+)
G60029 NA non-coding upstream 434531 5842775 ~ 5843074 (+)
G59993 NA non-coding upstream 550164 5726602 ~ 5727441 (+)
G60267 NA non-coding downstream 545 6295991 ~ 6296234 (+)
LOC117596997 NA non-coding downstream 5879 6301325 ~ 6305562 (+)
G60312 NA non-coding downstream 84799 6380245 ~ 6380462 (+)
G60362 NA non-coding downstream 118354 6413800 ~ 6414013 (+)
G60384 NA non-coding downstream 130673 6426119 ~ 6426344 (+)
trnat-ugu_2 NA other upstream 133803 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 681380 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 885776 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 1087892 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 1262792 4974195 ~ 5014813 (+)
LOC117597080 NA other downstream 299680 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 388890 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1760610 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2399906 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2429099 8724545 ~ 9370485 (+)

Expression


Co-expression Network