LOC117597028


Basic Information

Item Value
gene id LOC117597028
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 441942 ~ 443429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577976.1
AACTACTTCGACATCTGCCAAAGAGATGAACTATATTAACTTGTACAGAGGAGCAGCAGTGGAGCAGGAAGATATCAGAGCTGGAATGGTACCTCAGAAATGACTAACCTACGAGAGAACCAAATGCATGTTGGAGCAGGAGGAGAACCTGAAGCTCAAACATAAGAATGGAGTAACAGAGGGAAGAGATTTATAACTTCATGCAGCATGATTCTGGAGCAAGGAGAGAGCTAAACTCAGATAGGAAGACGGGAATAAATGATTTCTCCATCCCTTTGTTCTTCACAACACCAAAAGAATACGACCTGACTACAGAATCTGCTGGAATCCTCCCTCATACTGTTTGTCAGTTCTAGACCTGACTActgcaagtcttttttttaatccctttatcTGTTACATATCCTCATCAGATCTTCTTATAGGCTTCTCCTGTCATATATTACCTTTGGAGATGATTTCACTGAGCACCACATCATGTACGAAGCCTGGTTTAGATCTCCACACCTGCTTTAATTTCCTgaaatttacatctagatgtgaaATAGCAAAATATAGCCATCACAGGTTTTACCAGCATCACCTTACCTACCTaactgttttattgtaaatgtaaatgatttatatacTGATGAAGTGACGTCTTAAAGTGTACTAAATACTGGTGCCTTTTACATGTTGAAGAGACACggtactttattttaaatacattttaaaagataaaaagcatgaaataCTTTCACTGGTAGAGactacattatcatttctgacTAATGTGAACTAAGTGGACGTTTTCATGGCAGTCTGTTTATACAGGCTCTTTTTCAGTTAATTTCACTGCAAGATGTTCAGTGCACAtgagaagaagtagaagaataACATACTCTATGTGTAGTCTTTTGAGAGGGTTATCTGTAGCATCATTACTAGAGATTGTGAGGGAGGATCTAAGCACACAGAACA
>XR_004577977.1
TGCCAAAGAGATGAACTATATTAACTTGTACAGAGGAGCAGCAGTGGAGCAGGAAGATATCAGAGCTGGAATGGTACCTCAGAAATGACTAACCTACGAGAGAACCAAATGCATGTTGGAGCAGGAGGAGAACCTGAAGCTCAAACATAAGAATGGAGTAACAGAGGGAAGAGATTTATAACTTCATGCAGCATGATTCTGGAGCAAGGAGAGAGCTAAACTCAGATAGGAAGACGGGAATAAATGATTTCTCCATCCCTTTGTTCTTCACAACACCAAAAGAATACGACCTGACTACAGAATCTGCTGGAATCCTCCCTCATACTGTTTGTCAGTTCTAGACCTGACTActgcaagtcttttttttaatccctttatcTGTTACATATCCTCATCAGATCTTCTTATAGGCTTCTCCTGTCATATATTACCTTTGGAGATGATTTCACTGAGCACCACATCATGTACGAAGCCTGGTTTAGATCTCCACACCTGCTTTAATTTCCTgaaatttacatctagatgtgaaATAGCAAAATATAGCCATCACAGGTTTTACCAGCATCACCTTACCTACCTaactgttttattgtaaatgtaaatgatttatatacTGATGAAGTGACGTCTTAAAGTGTACTAAATACTGGTGCCTTTTACATGTTGAAGAGACACggtactttattttaaatacattttaaaagataaaaagcatgaaataCTTTCACTGGTAGAGactacattatcatttctgacTAATGTGAACTAAGTGGACGTTTTCATGGCAGTCTGTTTATACAGGCTCTTTTTCAGTTAATTTCACTGCAAGATGTTCAGTGCACAtgagaagaagtagaagaataACATACTCTATGTGTAGTCTTTTGAGAGGGTTATCTGTAGCATCATTACTAGAGATTGTGAGGGAGGATCTAAGCACACAGAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577976.1 True 963 lncRNA 0.38 2 441942 443399
XR_004577977.1 False 948 lncRNA 0.38 2 441942 443429

Neighbor

gene id symbol gene type direction distance location
LOC117597016 NA coding downstream 120253 303683 ~ 321689 (-)
LOC113525282 LOC108267103 coding downstream 169322 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 256969 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 333848 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 357478 65830 ~ 84464 (-)
LOC117597018 NA coding upstream 256620 700049 ~ 704378 (-)
LOC117597015 NA coding upstream 266930 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 404644 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 419949 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 481605 925034 ~ 933915 (-)
G57799 NA non-coding downstream 6269 429960 ~ 435673 (-)
G57793 NA non-coding downstream 12406 427215 ~ 429536 (-)
LOC117597025 NA non-coding downstream 15857 421730 ~ 426085 (-)
G57760 NA non-coding downstream 20633 336270 ~ 421309 (-)
G57752 NA non-coding downstream 47531 344571 ~ 394411 (-)
G57747 NA non-coding upstream 9204 452633 ~ 698272 (-)
G57805 NA non-coding upstream 11413 454842 ~ 501206 (-)
G57808 NA non-coding upstream 27420 470849 ~ 471624 (-)
LOC117597021 NA non-coding upstream 37846 481275 ~ 482075 (-)
G57810 NA non-coding upstream 49223 492652 ~ 518985 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other downstream 141925 279982 ~ 300017 (-)
LOC117596995 LOC108268238 other downstream 343825 84815 ~ 98117 (-)
G57830 NA other upstream 168814 612243 ~ 614243 (-)
G57838 NA other upstream 240059 683488 ~ 746031 (-)
G57740 NA other upstream 290126 733555 ~ 734771 (-)
G57868 NA other upstream 542482 985911 ~ 1048841 (-)
LOC117597039 NA other upstream 566796 1010225 ~ 1029025 (-)

Expression


Co-expression Network