LOC117597048


Basic Information

Item Value
gene id LOC117597048
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17453446 ~ 17484922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577991.1
CAAGccgaggggaaaaaaaaagtcacgtCTCTTACAAACGTGAGTACTAGTACAATAAAGTATACCCTTGCTTATTAGGGGTCAAAAATAATGACAGTTTTGCACTGTTTGCGACAGCGACTTTTCGATTGCACATGGAGGGTTAAATGATTGTATGACTGATCTGTGGGCGGGTTTTACAGTcgacctccctctctcttcagTTCACCCATCAGTTCAGTGTACCACTGCAGTTCAGTAACACTGTAGTGTCCTGCAGCGTCATGGCAGAAtgtccaaaaaaagaaaatacaaaacgCACTTCACCTCAGACTACACTAAAGTGTACCCCTGCTTAATAGGGGTCAAAAATAATGGCAGTTTTGCTCGCTGCACTGTTTGCAACAGCGACTTTTCGATTGCCCATGGAGGGTTAAAAGATTGTAAGAGACATGTTGAGGGCTGCCTAATGAACTAAAGAATAAACAGGAGCTGATCACACTTTTGAGTGTGGTAATCTTCACCAGCACTGCACAACAGGCAGCAACCAACAACGGACAGTTTGACTTTTGTTCGTGGATGCCCAACACACCTTGCACCATGTGCCATCCTCCACCCATAGACAAGGACGGTGTCACTATGGATTTGGAGTCATGAACACACTCCCGGATGTCAGACAGTCATGGAAATGGCTATCACATGGCTTTTAGGAAGAACTCAGCCAGACGGAATACCTCTGGCACAGTACGAGGAACAGAACTTCACTGAGCCGGCAGCCCAAAAGATGATTGATAACTTCAGGCAGGATCTGAAAGACATCGAACCACCGCATCTCTATCTGTGCCCTAGCCGAATAGAGAACAGCATTACCATATTACTATATAAATTCTACAATTTATGATGATGTACTTCATGGTTAAGAGAGGTACAGACATTTTGAAAGGTACATTTTGAGAAGGTTGTTTGAAACAAGAAGAATATACTCCTAAGTTACAGAAACTTATTGGTGATTGTTGTAAAGCTACCCTCaccattcactttattaggaacaccaggTCAGgtggcagtagcacaatgcaaaaaacttcagttaatgttcacatcaaacatgagaatATGAAAAGGTGTGATCTCAGTGCATAGCTGCTTTTGGAACAGGtccactaatctttattgatgatgtaaatcatgatggtagcagcagaatgaattcagtaGTTTAAATGAAGATTTTGTCTCCCAAATGCcaagttacagagaaatgcatccaaattAATCGGAAGGAACTTTATCAAGACAATGATCGAATCTGACTTTATCAGGGctaaaaagtggaaggttttagactggccaa
>XR_004577992.1
ACTCCCAGGAGCCAACAAACAATGACATGTTCTTTGAAAACCCTAGAAATGTGATTGAAAGTGAAACAGTTGTAGTTTGCAGAGTACACTGTGTAAATGATATGATTCAGGCTTTctcagacaaaaacatactaCATGCCAATGTAACATTTAAACGTCTACTCGAAAATGGTGAGGAGGAAGCTGGCATCGGAGATGGAGTGTTCCAAGACTGTCTTACTGATTTCTGGGACACATTTTTTGCAACAAGAACTTGTGGAACAACTTACAAGAAACCTAATCTGCATGACACTTACCAAGAAAGAGAGTGGGAATCTGTTGCACATATTTTTGCTTTTGGATGGCGGCGCTTTCGTTACTTGCCAATTCAGCCTGCACCTCCTTTTCTTAAAGAAGCACTGTCATTTCCTTCACCAGAAACCAGTCTAATGGAGGTGGTTTTGAATTACATTAGCCCAACAGAGAAGGATGTTTTAAGTGAAGCACTCCAAGACTTCCAAAGTGCTGACATGGATGAATTCCTCAGTGTAGTCACAGCTGCTCAGTGCTTCCAAATGAAAACAATCTCCAGAACATAGTGGAAGAAATTGCACATAAAGAGATGGTGcaataatatttaaagataaaGTGCTGGCAACCTATTCTGTGATCTATTGGGGAAACCATGACTGCAGAAAGTCTGGACAAGATAGCTGAAAATCTCCAACCAAAGGTAAGAAGTGTCACAAAATCCAATAAGTTGCATAATAATCCCACAGTCAATGTCCCTGTCTGAAACAATTGTATCAAATCATCTCCTGCGATTCATTAGGGAAAGAGACCATAAGGAGCTTGGTCTTTTTCTCATATACTGCACAGGGTCTTATTTCTCTCCAAGACAGTTCAagtaacatttaaagaaatgaataagTTTTCAAGAACGCCCATTGCACACACTTGTACGCAACATTTGGAGCAACATTGTACACATCACATTGGCATGTGACTTCAGAACCTATGCAGAATTTAGGGCAGAGGTTTCCTCTGTGTTAAACAGTGGAGTGTGGCTAATGGTTATGTCACAGATGTATGAAGTGCCTGCACCAAACGAAAAAGATGTCTGGCTGCCTAATGAACTAAAGAATAAACAGGAGCTGATCACACTTTTGAGTGTGGTAATCTTCACCAGCACTGCACAACAGGCAGCAACCAACAACGGACAGTTTGACTTTTGTTCGTGGATGCCCAACACACCTTGCACCATGTGCCATCCTCCACCCATAGACAAGGACGGTGTCACTATGGATTTGGAGTCATGAACACACTCCCGGATGTCAGACAGTCATGGAAATGGCTATCACATGGCTTTTAGGAAGAACTCAGCCAGACGGAATACCTCTGGCACAGTACGAGGAACAGAACTTCACTGAGCCGGCAGCCCAAAAGATGATTGATAACTTCAGGCAGGATCTGAAAGACATCGAACCACCGCATCTCTATCTGTGCCCTAGCCGAATAGAGAACAGCATTACCATATTACTATATAAATTCTACAATTTATGATGATGTACTTCATGGTTAAGAGAGGTACAGACATTTTGAAAGGTACATTTTGAGAAGGTTGTTTGAAACAAGAAGAATATACTCCTAAGTTACAGAAACTTATTGGTGATTGTTGTAAAGCTACCCTCaccattcactttattaggaacaccaggTCAGgtggcagtagcacaatgcaaaaaacttcagttaatgttcacatcaaacatgagaatATGAAAAGGTGTGATCTCAGTGCATAGCTGCTTTTGGAACAGGtccactaatctttattgatgatgtaaatcatgatggtagcagcagaatgaattcagtaGTTTAAATGAAGATTTTGTCTCCCAAATGCcaagttacagagaaatgcatccaaattAATCGGAAGGAACTTTATCAAGACAATGATCGAATCTGACTTTATCAGGGctaaaaagtggaaggttttagactggccaa

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577991.1 False 1333 lncRNA 0.42 4 17453446 17484922
XR_004577992.1 True 1995 lncRNA 0.41 4 17457745 17484922

Neighbor

gene id symbol gene type direction distance location
pelp1 pelp1,LOC108434651,LOC102787544,LOC105891152,LOC103362118 coding upstream 34144 17405353 ~ 17419302 (+)
mtmr1a mtmr1 coding upstream 123900 17308621 ~ 17329546 (+)
mtm1 mtm1,LOC107749798,LOC107677984,LOC107750584 coding upstream 145576 17279486 ~ 17307870 (+)
si:ch73-211e3.1 mamld1 coding upstream 178264 17208503 ~ 17275182 (+)
LOC113539921 NA coding upstream 263994 17185021 ~ 17189452 (+)
si:dkey-6n21.12 LOC108267749 coding downstream 23503 17508425 ~ 17520166 (+)
si:dkey-6n21.13 LOC108267748,LOC108434655,LOC103038466 coding downstream 35354 17520276 ~ 17523339 (+)
LOC113539911 NA coding downstream 88668 17573590 ~ 17586296 (+)
LOC113539941 NA coding downstream 119385 17604307 ~ 17609478 (+)
LOC117597112 snapc2 coding downstream 132237 17617159 ~ 17620019 (+)
G65934 NA non-coding upstream 13074 17431077 ~ 17440372 (+)
G65927 NA non-coding upstream 49567 17402559 ~ 17403879 (+)
G65938 NA non-coding upstream 81307 17357338 ~ 17372139 (+)
G65939 NA non-coding upstream 93877 17358486 ~ 17359569 (+)
G65663 NA non-coding upstream 682603 16770605 ~ 16770843 (+)
G66124 NA non-coding downstream 92182 17577104 ~ 17578946 (+)
G66128 NA non-coding downstream 108710 17593632 ~ 17634867 (+)
G66144 snapc2 non-coding downstream 164443 17649365 ~ 17651710 (+)
G66151 NA non-coding downstream 218312 17703234 ~ 17703455 (+)
G66159 NA non-coding downstream 255153 17740075 ~ 17747165 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 52058 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1082489 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1134280 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1413462 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2794510 14632030 ~ 14658936 (+)
LOC113539940 NA other downstream 124570 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 515236 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 628511 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 712390 18197312 ~ 18208564 (+)
G66864 NA other downstream 1371534 18856456 ~ 18858652 (+)

Expression


Co-expression Network