LOC117597077


Basic Information

Item Value
gene id LOC117597077
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28713034 ~ 28717955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577998.1
ATccctgaacaaaaaaaacaccacagaaatCTTACAACACGATACTTTCCACAATACACTATATGCATCACAATTTTTGCAGCTTTGTGCGTCCATCTGAACtcgtgtactgtatgtgttcaACACTGCACATGCACATTTAACCCCATAggtgtttattcaacactgtaggACTTGATCTGATTATAAAGATGCTCAGTGGCTCTACATGTGTTCGTCTGTCTCTAAAGACATTCATCCAGCACTGAAGATGTTCATCTGTCTCTAAAGGTGTTTCATCCATTGCTGCTGGTGTTAATCTTATTCCAAAAGGTTCTTGTATGACAATAAACATGTTCATCTGAACCTGCAGGTCTACTACCTGTCTCTGAAGGTGTTCATCCAACTCTAAAAGATGTCATCTGACTCTATGAGTTCATCCAACAAGGCAGATATTCGTCCACTCTAAAAGCTGTTTATCTGAATCTAAAGgcATGGATGAGTCCGGGCCTGTCTGCGCTGAGCTGCTGCAGAGAGCTGGGAGAACCACGAGGAGGCCCGGAGCGGGTTTTAAACAGAAACGGCACAGCAGACCCCTCTTATCAGTGCCCTCGATGCGGTGCCCATGGCAACGAGATGGACAGACGAAACAATGCAAGACAGAGGACGAGAAAAGAGGGACGAAATGTGCAAATGACAGGTTCGCCTGCTTCACGTGCAGTCAGAGAATCACTGAAAAGTGACAATGCCcagaatgtaacaaaaaaatcaatttgtGCTGAAATGAGGTTATGAGGTTATGCATTGACCAATGAAGgaattttcacaaaataaacacacgGGACTTCCTGCAAGAGGCAGAGTGAGCAAATCTTAAGAGAGCACCTCTTTGTGTCCAATCACCAAATATGAGGAAGCAAGAGCCAAAAAGATCcttgaaattattaaataaaggtGTGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577998.1 True 941 lncRNA 0.43 3 28713034 28717955

Neighbor

gene id symbol gene type direction distance location
prdx1 LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788 coding downstream 1326 28708029 ~ 28711708 (-)
zte38 LOC108267617,LOC108430736 coding downstream 6511 28699669 ~ 28706523 (-)
uck2b uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741 coding downstream 23022 28686556 ~ 28690012 (-)
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding downstream 27458 28682472 ~ 28685576 (-)
scp2a scp2,scp2a coding downstream 32330 28668979 ~ 28680704 (-)
si:ch73-182a11.2 LOC108268045 coding upstream 4895 28722850 ~ 28736753 (-)
LOC113540626 rec8 coding upstream 27675 28745630 ~ 28756644 (-)
arl14 LOC108267661 coding upstream 44139 28762094 ~ 28763277 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding upstream 45349 28763304 ~ 28785755 (-)
LOC113540190 NA coding upstream 81022 28798977 ~ 28827964 (-)
G72796 NA non-coding downstream 44391 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 241263 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 329574 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 333902 28365657 ~ 28379132 (-)
G72658 pfn2,pfn2l non-coding downstream 568168 28081544 ~ 28144866 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 64968 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 114429 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 174061 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 222707 28940662 ~ 29029191 (-)
G73243 NA non-coding upstream 268517 28986472 ~ 28988383 (-)
LOC113540437 fam159a other downstream 60609 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 476229 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 476767 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 487431 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 671249 28016064 ~ 28041785 (-)
LOC117597168 NA other upstream 69659 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 155623 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 430683 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 846266 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 1006633 29724588 ~ 29730857 (-)

Expression


Co-expression Network