LOC113547257


Basic Information

Item Value
gene id LOC113547257
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6587543 ~ 6602226 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578002.1
GAGGTTAAAGGTCGGAGGTTACGGTGAAGCATAGCCTGCAGAGAGGTGCGCAACGCCCACAGCAGCTCCCAGCTCTGAGCTGAGAGCTCCCATCGTATGAGAGAACGGCCCGGCATGGTCACCTCCACCTGATCGCCATACGCTGCGAGAGAGAGGGGGGACAGGGTTAAACAGGTTGCAGTCAGTGAGGAGCAGGAGGGCCAGAGGATGGACTGCAGATGAGTCTCTGATGAAGACGCTACCGTTCGATTTAACTGCAGAGAAGAAAaTACCTGGATGAGGCTGGGGTAAAACCCTGCCAGCAGCACAGCTTTAAGAAGCTCCTCCTGATTGCTGTGCTGATTGAGCAGTGATGAAGGGCGGAGACACTCGGCAGGCTCTGCTCTTTTTGAGTGCCGAGGTCCACAACATGCACTATGTCATCGATGGTGATGGACGTCTCTGCGATGTTGGTTGCCAGGACAATTTTGCGCTGGCCCTCTGGGGGGCGCTTAAACACAACCTGCTGATCTGCTACAGACATGCTGGAGTGCActgagagggggaaaaaagggagaaCAGACAGGAGGGATTAAACAGCTTGGAcctttatttttgtacataaatCATAACATAAAGGATGAGCTGTGAGCCCATTTGGAAGGCCCGTTTCTCCTCTAGCTTCTGCTGCACGGCTTTAATGTCCTGCCAGCCAGGCAGAAAACACAGCACCGCACCTGCccagaaatagaaagaaagaagacacAAGGTGGGGCAGGAATCAGAAAAAACACCTGGTTGTAATGTAAAACAGATGTTTTacaaaagagacagaatgaagaagtgtgtgttttgtttaccTGGCTCTCcatgagtgtgaatgtgatcAATCACATCGGCCACTAAATCAAGGTCAGGGGTCGGATCATCCTTCTCCTTTTTAATGCATAAACAGCGAAAAACCTGTTAGCATTTATTCTGCTGCAAttttcacctgtctatctgtctcactgccCCTTTtctcacctgtctatctgtctcatTGTCCCTTTTCTCATCCGTATACAGTATCTGTCTAACTCTCCCTTTTCTCACCCATATA
>XR_004578003.1
GAGGTTAAAGGTCGGAGGTTACGGTGAAGCATAGCCTGCAGAGAGGTGCGCAACGCCCACAGCAGCTCCCAGCTCTGAGCTGAGAGCTCCCATCGTATGAGAGAACGGCCCGGCATGGTCACCTCCACCTGATCGCCATACGCTGCGAGAGAGAGGGGGGACAGGGTTAAACAGGTTGCAGTCAGTGAGGAGCAGGAGGGCCAGAGGATGGACTGCAGATGAGTCTCTGATGAAGACGCTACCGTTCGATTTAACTGCAGAGAAGAAAaTACCTGGATGAGGCTGGGGTAAAACCCTGCCAGCAGCACAGCTTTAAGAAGCTCCTCCTGATTGCTGTGCTGATTGAGCAGTGATGAAGGGCGGAGACACTCGGCAGGCTCTGCTCTTTTTGAGTGCCGAGGTCCACAACATGCACTATGTCATCGATGGTGATGGACGTCTCTGCGATGTTGGTTGCCAGGACAATTTTGCGCTGGCCCTCTGGGGGGCGCTTAAACACAACCTGCTGATCTGCTACAGACATGCTGGAGTGCActgagagggggaaaaaagggagaaCAGACAGGAGGGATTAAACAGCTTGGAcctttatttttgtacataaatCATAACATAAAGGATGAGCTGTGAGCCCATTTGGAAGGCCCGTTTCTCCTCTAGCTTCTGCTGCACGGCTTTAATGTCCTGCCAGCCAGGCAGAAAACACAGCACCGCACCTGCccagaaatagaaagaaagaagacacAAGCTGTGTCTTTTCCTCACCTGGGTGTTCGCCTTCTCCACTGGTCTCCTCATCTCCCTCAGCACCTCCTCCAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578002.1 True 1081 lncRNA 0.49 6 6588011 6602226
XR_004578003.1 False 821 lncRNA 0.53 7 6587543 6602226

Neighbor

gene id symbol gene type direction distance location
mylk4a LOC108268043 coding downstream 27217 6518463 ~ 6560326 (-)
trnak-cuu_3 NA coding downstream 406584 6180887 ~ 6180959 (-)
ripk1l ripk1 coding downstream 601328 5972624 ~ 5986215 (-)
LOC113547282 LOC108267872 coding downstream 620239 5956127 ~ 5967304 (-)
LOC113547251 LOC108267869,LOC108267871 coding downstream 637863 5931330 ~ 5949680 (-)
LOC113547256 LOC108267788 coding upstream 574 6602800 ~ 6612842 (-)
LOC117597185 NA coding upstream 173753 6775979 ~ 6778040 (-)
LOC117597065 NA coding upstream 176130 6778356 ~ 6779988 (-)
LOC117597066 NA coding upstream 177769 6779995 ~ 6789815 (-)
LOC117597067 NA coding upstream 192859 6795085 ~ 6798486 (-)
trnae-cuc_12 NA non-coding downstream 143728 6443744 ~ 6443815 (-)
G60333 NA non-coding downstream 192472 6394865 ~ 6395071 (-)
G60328 NA non-coding downstream 197466 6389703 ~ 6390077 (-)
G60311 NA non-coding downstream 207646 6379698 ~ 6379897 (-)
G60181 NA non-coding downstream 614930 5969895 ~ 5972613 (-)
G60503 NA non-coding upstream 39745 6641971 ~ 6642185 (-)
G60672 NA non-coding upstream 183101 6785327 ~ 6792952 (-)
G60669 NA non-coding upstream 276418 6878644 ~ 6881335 (-)
G60727 NA non-coding upstream 628428 7230654 ~ 7230904 (-)
G60726 NA non-coding upstream 639899 7242125 ~ 7246436 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 627998 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 1093504 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 1501186 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 1642522 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 1939663 4642020 ~ 4647880 (-)
LOC117597002 LOC107721237 other upstream 279156 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 1850384 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 1969270 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 2037242 8639468 ~ 9528825 (-)
G61478 NA other upstream 2381008 8983234 ~ 8984453 (-)

Expression


Co-expression Network