LOC113540631


Basic Information

Item Value
gene id LOC113540631
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30128728 ~ 30138872 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578005.1
TTTACTCGCCCTCCCTCTGCTGTGGGGAAAGGGGGGGCTTCTTAAAGGGGAACGCACACCGAAAATGACCTGACACACGCCACAACTTTTTCAACTCATTCCGTCATAATTGTTTGTTGGCCAAACAGGACAGTTTGATTGATTTTAAAAAGGAGCTTTGACATgttggcAGTGTATAATGGGCCTAAGAGGCAGAGGAACCAAGAAAGAAGCCCGAAAATTTCACATTGACGCCTATAATCCGGAGCTATCTCCCGATgagcaagggagagagagagagagagagagagatggaggaagagaggaCGAGGGAGATagtgagggatggagagagactTGACGAGACACTCCGAGAATAACACTTTACATTTTGTCGCCGTTTCCGAATCTCGGATCTCTGACTGTGCCACACAACCTCTACAGCCACCATTTTTCCTCTGGTTCTTTTTAATTGAATGTGGACCAGGCACCTCGGACGGAAAAagacacccttttttttttttctggagcaAGCGCTGTTGCATCCAATTACAGATAGGGAGAGGAGGGGGGCTAGCTAAAGCCCAGGAAGAGTTTATGACCCTTTCCACACATCTGGGATGAAAagcaggctgtttttttttttttttttcaagcttgaGGAGAGGCACAGGCATGTCTGCGAGAAAAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578005.1 True 672 lncRNA 0.47 4 30128728 30138872

Neighbor

gene id symbol gene type direction distance location
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 43867 30064050 ~ 30084861 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 72008 30050560 ~ 30056720 (-)
LOC113540054 NA coding downstream 85717 30037408 ~ 30043011 (-)
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding downstream 91662 30025069 ~ 30037066 (-)
LOC113540096 coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044 coding downstream 114163 29903744 ~ 30014565 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding upstream 73517 30212389 ~ 30223320 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding upstream 454834 30593706 ~ 30701045 (-)
LOC113540512 NA coding upstream 582160 30721032 ~ 30724657 (-)
carmil3 carmil3,LOC108268291 coding upstream 1151949 31290821 ~ 31344984 (-)
LOC113540523 LOC108267123 coding upstream 1215030 31353902 ~ 31356972 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding downstream 25858 30101440 ~ 30102870 (-)
G73652 NA non-coding downstream 30755 30095790 ~ 30097973 (-)
G73618 NA non-coding downstream 103692 29976671 ~ 30025036 (-)
G73607 NA non-coding downstream 199239 29929264 ~ 29929489 (-)
G73492 NA non-coding downstream 281837 29846674 ~ 29846891 (-)
G73670 NA non-coding upstream 48024 30186896 ~ 30191121 (-)
G73684 NA non-coding upstream 56807 30195679 ~ 30197576 (-)
G73834 NA non-coding upstream 338531 30477403 ~ 30478234 (-)
G73977 NA non-coding upstream 631225 30770097 ~ 30771174 (-)
G73974 NA non-coding upstream 638887 30777759 ~ 30845482 (-)
G73619 blvra other downstream 106203 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 397871 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 553001 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 956807 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1243763 28873578 ~ 28884965 (-)
LOC113540055 LOC108268301 other upstream 602655 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 634577 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1108188 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1731646 31870518 ~ 31871874 (-)
G74547 NA other upstream 1735437 31874309 ~ 31874827 (-)

Expression


Co-expression Network