LOC117597084


Basic Information

Item Value
gene id LOC117597084
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25328218 ~ 25330540 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578007.1
ACTATGTTGCTACAAATTactaatgaataattaataaatgtctactcaatttattaataaatatgaaaaatagaaGGCAGTACACTGGTTTAAAGGCTCTCAAaattttattgctgtatttaatactgtatgtaaatctAGCACACACCAAATGGCCTATAGCCTACCGTTTCTCTTGAATTGCCTCCTACTGAATAGCTGCATAATTGTTTGATATGTATTGATACATTACATCACTTCTTTGAAGTCAATTCATTGTTTCAACAGCACAATTATCATAACATTTAGCACCATATTAAATGACGGTGCAGCCTCTTTAGATTGGCAACTACTAATAGTCCTACTCCTGGAGCTTGGGTCTTGCAAGTCTTTCTACCAGACATTCAGCCATGACGAAGATCTCTTTCAAGATTAGCGACAAGATTAGGTCTATGCGGAGAGCCGAACACTTCCTGACTGACATCAGGGGTTTCTGATTGCAGTCAGGTGTGTGCGCCTCCAACAGCATGATTGTCATCTTCGGACTCCtgcaaccaaaaaaacaaaaaaaaacaagtgtacTGAAAATGAACAGGTACGGGTATGTTTCTTTTCTCGATCCAGCTGACATGTATACAATCAAGCTGATATCGTATACAACTTTGTGCATGTTTGTTTGTAGTGTAGCACTACACGCTCTTGATAATATACTGAATGAGGATGATGAGCGGTCTGCTAGAAATATTCAGAGTGAGCTGCAGTCCCGATTGCAATTGCGAGTATCAACCAGCACCATCAGGAGATGTGTAAGCAACTTGGGTGGACATACGGCAAAGCCCGTGAAACGAAAATGAACACCGCATCATTTTATGGTGGCAGGATGAGGAACACAAAGAAgACACCTTTGGTGGAAAACAGACTCCCCCTCCCTAAACCGACAGTAGAGAGCCGGATGAAACAAAAGAAGCGCATGGTCCAGAAAGAACGGGAAGTGTCATGTCTGAATAAGTTTCAAACACTGGACACCTCGAGAGAGAAAATGTGGTAGAGGACTTGAGGCCTGAGCTAGCGAGACAGAATACCGAGATTGAGGCATTGAGCAAGGAGCACCGTGTCTGCAAGAAGGAATATATAGACGCAAAAGCAGCTCTTGCAGATTTAAAAACGACGCACAACGGGCTCGTCCAGGCCCATGTGGCTGTAATGAGGTACCTAAAAGAGATGCAAACTGCAACAGAGGCATTGAGGACTCAACACGACTATGCCCACCCCCCAACATCAGACTGTCTGACTGAGGTCACTGCTAGCCTGAGTGGAGATGCAGACAATAGGTAAACACCATCTTCTGTCGTCACCGCAGGTCCAACGCCAACAACACCAGCTGGAAGTTGAACGTCATCCCGAACTCCAGTTTTCTTTTCCCTCACCATAGCAGCTAGAGATTCTAATGATACAGCGTCAGGGACGGCCGGATCAATATGGCTGTTTGACGTTCCATGCCATTTTACTAGAGCAGCGAACAAAAGAGTGGGCATCGACCACCAACTGGGATGGTTCAAGGGGCAAATCTGCATTGCCTATGAACCTAAGGCACTTTATCTTTCTCAGAGGTTCCCCAACATGACCAACACTGACCAAAAGTGCATTAAAGACAGAGTCAATGAGTTCTTACCCTCCCTAAGGAATGCTGTTTCCCACAGGCACCtgcatttttaaccattttttacttagaaaaaaattattttaaatttgctttaatgttcccattttctttgtaataaatttaattcCTAAAACCTAATTATCACTTATCTTTCTTTCCTTAAGGAATAAACAGAGCTTATTGTCCAAGACTCAAACTGTTATTAATACATAAGCTCAAATATATTGCCAAGCAAGAAAAGTCatgtataatattttgttgAGAGAAAACTTTAAGAATAAGTGAAACCCACTTATCCTGTCATTTCTCATTTCCATGACAACTGAACACTAGCGTTTTTGAAAAATTTTCTCTTGTGTGATGGCAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578007.1 True 2011 lncRNA 0.41 4 25328218 25330540

Neighbor

gene id symbol gene type direction distance location
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding upstream 280901 25021613 ~ 25047317 (+)
klhl20 klhl20,LOC106569069 coding upstream 314912 24994877 ~ 25013306 (+)
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding upstream 520814 24792295 ~ 24807404 (+)
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding upstream 731109 24587207 ~ 24597109 (+)
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding upstream 766940 24507205 ~ 24561278 (+)
cop1 rfwd2,LOC107722073,LOC107726924 coding downstream 312862 25643402 ~ 25664410 (+)
mrps14 mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590 coding downstream 620614 25951154 ~ 25953899 (+)
cacybp cacybp,LOC100304883 coding downstream 624416 25954956 ~ 25964158 (+)
plk3 plk3,LOC107726922,LOC107557223,LOC107722069,LOC107658359,LOC107678927 coding downstream 643341 25973881 ~ 25979456 (+)
rasal2 rasal2,LOC107678931 coding downstream 712383 26042923 ~ 26124146 (+)
G70520 NA non-coding upstream 329993 24997916 ~ 24998225 (+)
LOC113540553 NA non-coding upstream 478731 24839221 ~ 24849487 (+)
G70204 NA non-coding upstream 578305 24681981 ~ 24749913 (+)
G70142 NA non-coding upstream 742311 24585427 ~ 24585907 (+)
G70140 NA non-coding upstream 743379 24584614 ~ 24584839 (+)
G70695 NA non-coding downstream 226297 25556837 ~ 25557761 (+)
G70763 LOC107732307 non-coding downstream 227887 25558427 ~ 25561346 (+)
G70778 NA non-coding downstream 254786 25585326 ~ 25585534 (+)
G70780 NA non-coding downstream 255713 25586253 ~ 25586458 (+)
G70782 NA non-coding downstream 259427 25589967 ~ 25590187 (+)
kif2c kif2c other upstream 456955 24859026 ~ 24871263 (+)
G69971 NA other upstream 1218329 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 1221995 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 2007875 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 2675771 22649810 ~ 22652447 (+)
tnr tnr other downstream 377287 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 566477 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 885524 26216064 ~ 26224038 (+)
G71385 NA other downstream 898224 26228764 ~ 26229191 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other downstream 957750 26288290 ~ 26292784 (+)

Expression


Co-expression Network